View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20891_high_7 (Length: 242)
Name: NF20891_high_7
Description: NF20891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20891_high_7 |
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| [»] chr3 (6 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 139; Significance: 7e-73; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 66 - 242
Target Start/End: Original strand, 28394240 - 28394417
Alignment:
| Q |
66 |
ttagaatattttttgagctgaagtttagttattgttttggcatccaataattgtattttannnnnnnnn-caatttctaattaaccttactacatattgc |
164 |
Q |
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| T |
28394240 |
ttagaatattttttgagctgaagtttagttattgttttggcatccaataattgtatttttttatttttttcaatttctaattaaccttactacatattgc |
28394339 |
T |
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| Q |
165 |
attttctttgagtatagcatagcctatatagggctcacatgaagcaatcacaatcaataaatcatattatatagctaa |
242 |
Q |
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| T |
28394340 |
attttctttgagtatagcatagcctatatagggctcacatgaagcaatcacaatcaataaatcatattatatagctaa |
28394417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 28394100 - 28394166
Alignment:
| Q |
1 |
cttgtgtcagcatgatgacatagattctaagagcaacaaatccaaaagagtacacaaacatcttgtt |
67 |
Q |
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| T |
28394100 |
cttgtgtcagcatgatgacatagattctaagagcaacaaatccaaaagagtacacaaacatcttgtt |
28394166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 185 - 242
Target Start/End: Original strand, 28390759 - 28390816
Alignment:
| Q |
185 |
agcctatatagggctcacatgaagcaatcacaatcaataaatcatattatatagctaa |
242 |
Q |
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| T |
28390759 |
agcctatatagggctcacatgaagcaatcacaatcaataaataatattgtatagctaa |
28390816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 28369799 - 28369865
Alignment:
| Q |
177 |
tatagcatagcctatatagggctcacatgaagcaatcacaatcaataaatc-atattatatagctaa |
242 |
Q |
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| T |
28369799 |
tatagcatagcctatatagggctcacatgaagcgatcacaatcgataaaactatattctatagctaa |
28369865 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 28377617 - 28377683
Alignment:
| Q |
177 |
tatagcatagcctatatagggctcacatgaagcaatcacaatcaataaatc-atattatatagctaa |
242 |
Q |
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| T |
28377617 |
tatagcatagcctatatagggctcacatgaagcgatcacaatcgataaaactatattctatagctaa |
28377683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 177 - 242
Target Start/End: Original strand, 28385439 - 28385505
Alignment:
| Q |
177 |
tatagcatagcctatatagggctcacatgaagcaatcacaatcaataaatc-atattatatagctaa |
242 |
Q |
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| T |
28385439 |
tatagcatagcctatatagggctcacatgaagcgatcacaatcgataaaactatattctatagctaa |
28385505 |
T |
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