View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20891_low_2 (Length: 350)
Name: NF20891_low_2
Description: NF20891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20891_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 43725733 - 43725413
Alignment:
| Q |
1 |
tcgaatctttatgtttgtannnnnnnagaaggacttgggtgaagttcccctaaggtcctaattcaactatattaatctaaataatttgatgaaaagtcct |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43725733 |
tcgaatctttatgtttgtatttttttagaaggacttgggtgaagttcccctaaggtcctaattcaactatattaatctaaataatttgataaaaagtcct |
43725634 |
T |
|
| Q |
101 |
aattcctagatgtgatgggagaattannnnnnnattaggaattatg-tgccctaaactggaaaggcctatgaaaagatgattccacatacgatgcagcaa |
199 |
Q |
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|||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43725633 |
aattcctagatgtgatgggagaattatttttttattaggaattatgctgccctaaactggaaaggcctatgaaaagatgattccacatacgatgcagcaa |
43725534 |
T |
|
| Q |
200 |
aagagcactatcttgtgccctatcttgtgagatatttattatataaagaaacgtgcatagatgcaggagtagcaagcaagcaaaagctattttcaatttt |
299 |
Q |
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||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43725533 |
aagagca------------ctatcttgtgagatatttattatataatgaaacgtgcatagatgcaggagtagcaagcaagcaaaagctattttcaatttt |
43725446 |
T |
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| Q |
300 |
cttagaaaggaattacgtatgtgggttttaaat |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
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| T |
43725445 |
cttagaaaggaattacgtatgtgggttttaaat |
43725413 |
T |
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