View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20891_low_4 (Length: 323)
Name: NF20891_low_4
Description: NF20891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20891_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 4e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 152 - 311
Target Start/End: Complemental strand, 32524607 - 32524448
Alignment:
| Q |
152 |
atttggctaccgaaaaaccattgaaacctgcaaaaaatagataatcaaagtatcaattttagatcaatagatatgtcataaaatggtcaaaagacacata |
251 |
Q |
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| T |
32524607 |
atttggctaccgaaaaaccattgaaacctgcaaaaaatagataatcaaattatcaattttagatcaatagatatgtcataaaatggtcaaaagacacata |
32524508 |
T |
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| Q |
252 |
aatgtgatttcggataaattcaatcagattctttaaaaacaattcaagacataacatact |
311 |
Q |
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| T |
32524507 |
aatgtgattttggataaattcaatcagattctttaagaacaattcaagacataacatact |
32524448 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 212 - 288
Target Start/End: Complemental strand, 45832116 - 45832040
Alignment:
| Q |
212 |
agatcaatagatatgtcataaaatggtcaaaagacacataaatgtgatttcggataaattcaatcagattctttaaa |
288 |
Q |
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| T |
45832116 |
agatcaatagatatgtcatagaattgtcaaaagacacaaaactgtgattttgcataaattcaatcagattttttaaa |
45832040 |
T |
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Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 147 - 294
Target Start/End: Original strand, 43604017 - 43604163
Alignment:
| Q |
147 |
attgaatttggctaccgaaaaaccattgaaacctgcaaaaaatagataatcaaagtatcaattttagatcaatagatatgtcataaaatggtcaaaagac |
246 |
Q |
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| T |
43604017 |
attgaatttggctactaaaaaaccactgaaatctgcaaaa-atagataatcaaagtatcaattttagatcaatagatatgtcataaaatggtcaaaagac |
43604115 |
T |
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| Q |
247 |
acataaatgtgatttcggataaattcaatcagattctttaaaaacaat |
294 |
Q |
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| T |
43604116 |
acagagatttgattttgcataaatgcaattagattctttaagaacaat |
43604163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 139 - 307
Target Start/End: Original strand, 30178289 - 30178455
Alignment:
| Q |
139 |
ttcactatattgaatttggctaccgaaaaaccattgaaacctgcaaaaaatagataatcaaagtatcaattttagatcaatagatatgtcataaaatggt |
238 |
Q |
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| T |
30178289 |
ttcacgatattgaagttggctactgcaaaaccattcaa-cctgcaaaaag-agataatgaaagtgtctattttggataaatagatatgacatagaattgt |
30178386 |
T |
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| Q |
239 |
caaaagacacataaatgtgatttcggataaattcaatcagattctttaaaaacaattcaagacataaca |
307 |
Q |
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| T |
30178387 |
caaaaaacatataggtgtgattttgcataaattcaattggatttattatgaaccattcaagacataaca |
30178455 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 13 - 138
Target Start/End: Original strand, 39072291 - 39072416
Alignment:
| Q |
13 |
tatctacccttcgatttagcatagggtaccttagaaaattgattctgaatgatgcacaaacaaccaataacttatgctacatactgaacttgacctggac |
112 |
Q |
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| T |
39072291 |
tatctaccattggatttagcagaaagtaccttagataattgattctgaatgacacacaaagagccaataacttttgctgcatactgaacttgacctggac |
39072390 |
T |
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| Q |
113 |
aaacacatcagcaaataaagttatca |
138 |
Q |
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| T |
39072391 |
aaacacatcagcaactaaagttatca |
39072416 |
T |
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