View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20891_low_7 (Length: 243)
Name: NF20891_low_7
Description: NF20891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20891_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 123; Significance: 3e-63; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 28394410 - 28394553
Alignment:
| Q |
1 |
atagctaaaattgatcctacaatacgttgaatcaatgaaaaaatatgttgtcacctattggttcacattctataaataactttgccacgaccaaacaata |
100 |
Q |
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| T |
28394410 |
atagctaaaattgatcctacaatacgttgaatcaatgaaaaaatatgttgtcacctattggttcacattctataaataactttgccacgaccaaacaata |
28394509 |
T |
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| Q |
101 |
ttatttctcttttgtgnnnnnnncttttcttatcatgaaaggtc |
144 |
Q |
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| T |
28394510 |
ttatttctcttttgtgtttttttcttttcttatcatgaaaggtc |
28394553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 28369869 - 28369976
Alignment:
| Q |
11 |
ttgatcctacaatacgttgaatcaatgaaaaaatatgttgtcacctattgg-ttcacatt-ctataaataactttgccacgaccaaacaatattatttct |
108 |
Q |
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|||||||||||||||| | |||||||| ||||||||||||||||||||||| |||| ||| |||||||||||||||||||| ||||||| |||||||||| |
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| T |
28369869 |
ttgatcctacaatacgctcaatcaatgcaaaaatatgttgtcacctattgggttcatatttctataaataactttgccacggccaaacagtattatttct |
28369968 |
T |
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| Q |
109 |
cttttgtg |
116 |
Q |
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| T |
28369969 |
cttttgtg |
28369976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 28377687 - 28377794
Alignment:
| Q |
11 |
ttgatcctacaatacgttgaatcaatgaaaaaatatgttgtcacctattgg-ttcacatt-ctataaataactttgccacgaccaaacaatattatttct |
108 |
Q |
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| T |
28377687 |
ttgatcctacaatacgctcaatcaatgcaaaaatatgttgtcacctattgggttcatatttctataaataactttgccacggccaaacagtattatttct |
28377786 |
T |
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| Q |
109 |
cttttgtg |
116 |
Q |
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|||||||| |
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| T |
28377787 |
cttttgtg |
28377794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 28385509 - 28385616
Alignment:
| Q |
11 |
ttgatcctacaatacgttgaatcaatgaaaaaatatgttgtcacctattgg-ttcacatt-ctataaataactttgccacgaccaaacaatattatttct |
108 |
Q |
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|||||||||||||||| | |||||||| ||||||||||||||||||||||| |||| ||| |||||||||||||||||||| ||||||| |||||||||| |
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| T |
28385509 |
ttgatcctacaatacgctcaatcaatgcaaaaatatgttgtcacctattgggttcatatttctataaataactttgccacggccaaacagtattatttct |
28385608 |
T |
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| Q |
109 |
cttttgtg |
116 |
Q |
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|||||||| |
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| T |
28385609 |
cttttgtg |
28385616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 28390845 - 28390882
Alignment:
| Q |
79 |
actttgccacgaccaaacaatattatttctcttttgtg |
116 |
Q |
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| T |
28390845 |
actttgccacggccaaacaatattatttctcttttgtg |
28390882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 194 - 225
Target Start/End: Original strand, 28394603 - 28394634
Alignment:
| Q |
194 |
cacattctattttttacatgcaaaaggggaga |
225 |
Q |
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| T |
28394603 |
cacattctattttttacatgcaaaaggggaga |
28394634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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