View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20891_low_9 (Length: 238)
Name: NF20891_low_9
Description: NF20891
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20891_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 7353649 - 7353758
Alignment:
| Q |
19 |
gatgttcaacctattttgactatcattgttctctggattaattggggatggacttctacactatcacaatctaaacaactagcatcaacattctcattta |
118 |
Q |
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| T |
7353649 |
gatgttcaacctattttgactatcattgttctctggattaattgggcatggacttctacactatcacaatctaaacaactaacatcaacattctcattta |
7353748 |
T |
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| Q |
119 |
ggcattttag |
128 |
Q |
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|| ||||||| |
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| T |
7353749 |
ggtattttag |
7353758 |
T |
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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 7353826 - 7353868
Alignment:
| Q |
196 |
aaaaccacattgaacttaaacataattctcatttaggtatttt |
238 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7353826 |
aaaaccacattgaacttaaacataattctcatttaggtatttt |
7353868 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 127
Target Start/End: Complemental strand, 31367560 - 31367498
Alignment:
| Q |
66 |
atggacttctacactatcacaatctaaa-caactagcatcaacattctcatttaggcatttta |
127 |
Q |
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|||||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
31367560 |
atggacttatacactatcacaatctaaaacaactaacatcaacattctcatttaggcatttta |
31367498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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