View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20892_high_1 (Length: 254)
Name: NF20892_high_1
Description: NF20892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20892_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 13 - 235
Target Start/End: Complemental strand, 48877925 - 48877703
Alignment:
| Q |
13 |
aatatgtgaaatgttgtagcctcacaaccacaaccagatttggcaaaatgggcaggacctcctcttgaaaaattaaaatgtaacatcaatgtagctttta |
112 |
Q |
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| T |
48877925 |
aatatgtgaaatgttgtagccccacaaccgcaaccagatttgacaaaatgggcaggacctcctcttgaaaaattaaaatgtaacatcaatgtagctttta |
48877826 |
T |
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| Q |
113 |
tgaataacaaagtgggtatcagtatctgtcttagcgaccatcatgagaattttattaaagctaaaactacaaggtatgctcctgtgttattagtcaagga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48877825 |
tgaataacaaagtgggtatcagtatctgtcttagcgaccatcatgagaattttattaaagctaaaactacaaggtatgctcctgtgttattagtcaagga |
48877726 |
T |
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| Q |
213 |
aggtgaagcaaatggtttattgc |
235 |
Q |
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||||||||||||||||||||||| |
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| T |
48877725 |
aggtgaagcaaatggtttattgc |
48877703 |
T |
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