View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20892_low_2 (Length: 209)
Name: NF20892_low_2
Description: NF20892
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20892_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 5e-95; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 54963407 - 54963586
Alignment:
| Q |
16 |
cacagagtagtgataaatgaagaaaaggaaaggctcacagtagcaatgttctgtatcccagattctgaacaagagattaaaccagtcgacaaattagtgg |
115 |
Q |
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| T |
54963407 |
cacagagtagtgataaatgaagaaaaggaaaggctcacagtagcaatgttctgcatcccagattctgaacaagagattaaaccagtcgacaaattagtgg |
54963506 |
T |
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| Q |
116 |
acgggacaaagccaatattatacagaccagtgaaaaactatgttgatttatattttcagtattaccagcagggaaaaagg |
195 |
Q |
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| T |
54963507 |
acgggacaaagccaatattatacagaccagtgaaaaactatgttgatttatattttcagtattaccagcagggaaaaagg |
54963586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 56 - 195
Target Start/End: Original strand, 54966383 - 54966522
Alignment:
| Q |
56 |
tagcaatgttctgtatcccagattctgaacaagagattaaaccagtcgacaaattagtggacgggacaaagccaatattatacagaccagtgaaaaacta |
155 |
Q |
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| T |
54966383 |
tagctatgttctgtgtcccagattaagagaaagagattaaaccagttgacaaattagtgagcgagtcaaggcctaagttacacagaccaataaaaagtta |
54966482 |
T |
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| Q |
156 |
tgttgatttatattttcagtattaccagcagggaaaaagg |
195 |
Q |
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| T |
54966483 |
tgttgaaatatattttcaatattaccagcaaggaaaaagg |
54966522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 31326517 - 31326387
Alignment:
| Q |
16 |
cacagagtagtgataaatgaagaaaaggaaaggctcacagtagcaatgttctgtatcccagattctgaacaagagattaaaccagtcgacaaattagtgg |
115 |
Q |
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| T |
31326517 |
cacagagcagtggtaaatgaagaaaaggcaaggctctcagtagctatgttatgccgcccagattcggagaaagagattcaaccgattgacaaactagtga |
31326418 |
T |
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| Q |
116 |
acgggacaaagccaatattatacagaccagt |
146 |
Q |
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| T |
31326417 |
acgagtcaaggccattatcatacagaccagt |
31326387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 146
Target Start/End: Complemental strand, 31320481 - 31320351
Alignment:
| Q |
16 |
cacagagtagtgataaatgaagaaaaggaaaggctcacagtagcaatgttctgtatcccagattctgaacaagagattaaaccagtcgacaaattagtgg |
115 |
Q |
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|||||||||||| |||||| ||||| |||||||||| |||| || ||||| || |||| |||| || |||||||| |||| | |||||| ||||| |
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| T |
31320481 |
cacagagtagtggtaaatgcagaaagggaaaggctctcagttgctatgttttgccgcccaaattcagagaaagagattcaaccgattgacaaactagtga |
31320382 |
T |
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| Q |
116 |
acgggacaaagccaatattatacagaccagt |
146 |
Q |
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| T |
31320381 |
acgagtcaaggccagtattatacaaaccagt |
31320351 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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