View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20893_high_3 (Length: 400)
Name: NF20893_high_3
Description: NF20893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20893_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 23 - 351
Target Start/End: Complemental strand, 12945512 - 12945185
Alignment:
| Q |
23 |
tagggtggtcgaataaacttcgacgcacaaattgataactttgcaaatacaagagaacaaattataagaacaattggtgttcctgcgactctcgagttgc |
122 |
Q |
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| T |
12945512 |
tagggtggtcgaataaacttcgatgcacaaattgataactttgcaaatacaagagaacaaattatcagaacaattggtgttcctgcgactctcgagttgc |
12945413 |
T |
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| Q |
123 |
ttaagaatgctctcttcacagtagcacttggctcaaatgatttccttgataactatttagcacgtacaaagcaagagagagagttgttacctctaaacaa |
222 |
Q |
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| T |
12945412 |
ttaagaatgctctcttcacagtagcacttggctcaaatgatttccttgataactatttagcacgtacaaagcaagagagagagttgttacctccagacaa |
12945313 |
T |
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| Q |
223 |
atttgtcgagacaatgatatcaaaactctgggtacaactcacggtaatatttccaagaccctataacattttcttacaagactgttattattttttaaca |
322 |
Q |
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| T |
12945312 |
atttgtcgagacaatgatatcaaaactcagagtacaactcacggtaattttgccaa-accctataacattttctatcaagactattgttattttttaaaa |
12945214 |
T |
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| Q |
323 |
ttttcatacctgaagttttaaaaagctca |
351 |
Q |
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| T |
12945213 |
ttttcatacttgaagttttaaaaaactca |
12945185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 185
Target Start/End: Complemental strand, 12940302 - 12940135
Alignment:
| Q |
18 |
attaatagggtggtcgaataaacttcgacgcacaaattgataactttgcaaatacaagagaacaaattataagaacaattggtgttcctgcgactctcga |
117 |
Q |
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| T |
12940302 |
attaataggttggtcgaatcaactttgatgcacaaattgataactttgcaaatacaagagaagatatcattagcaaaattggtgttcgtggagctctcaa |
12940203 |
T |
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| Q |
118 |
gttgcttaagaatgctctcttcacagtagcacttggctcaaatgatttccttgataactatttagcac |
185 |
Q |
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| T |
12940202 |
attgcttaagaattctctctttacagtagcatttggctcaaacgattttcttgataactatttggcac |
12940135 |
T |
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