View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20893_high_6 (Length: 298)
Name: NF20893_high_6
Description: NF20893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20893_high_6 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 298
Target Start/End: Complemental strand, 1936955 - 1936658
Alignment:
| Q |
1 |
cgtgtgttcaagatgaaacaattgataaaatgttaccagtacgtattctttaaagttgtatgttaatatttaccagtaaacattttaaacgataatactt |
100 |
Q |
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| T |
1936955 |
cgtgtgttcaagatgaaacaattgataaaatgttaccagtacgtattctttaaagttgtatgttaatatttaccagtaaacattttaaacgataatactt |
1936856 |
T |
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| Q |
101 |
attttatcccttaaaaaatagtatcgtagattggcacaccaagaatagtacaatgggagagaagaacaattgagcatgtgctcgaaatgaaacaatgatg |
200 |
Q |
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| T |
1936855 |
attttatcccttaaaaaatagtatcgtagattggcacaccaagaatagtacaatgggagagaagaacaattgagcatgtgctcgaaatgaaacaatgatg |
1936756 |
T |
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| Q |
201 |
ttcacataaacatgtgctcaaaattagtaaaaaatgttacatatgagtggtacaatagtggtttgacacataaggatgttcacgaatcaattctctat |
298 |
Q |
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| T |
1936755 |
ttcacataaacatgtgctcaaaattagtaaaaaatgttacatatgagtggtacaatagtggtttgacacataaggatgttcacgaatcaattctctat |
1936658 |
T |
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Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 221 - 295
Target Start/End: Complemental strand, 34819695 - 34819621
Alignment:
| Q |
221 |
aaattagtaaaaaatgttacatatgagtggtacaatagtggtttgacacataaggatgttcacgaatcaattctc |
295 |
Q |
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| T |
34819695 |
aaattaataaaaaataccacatatgagtggtacaagagtggtttgccacataagcatgtttatgaatcaattctc |
34819621 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 221 - 295
Target Start/End: Complemental strand, 37864024 - 37863950
Alignment:
| Q |
221 |
aaattagtaaaaaatgttacatatgagtggtacaatagtggtttgacacataaggatgttcacgaatcaattctc |
295 |
Q |
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|||||| |||||||| ||||||||||||||||| ||||||||| |||||||| ||||| | |||||||||||| |
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| T |
37864024 |
aaattaataaaaaataccacatatgagtggtacaagagtggtttgccacataagtatgtttatgaatcaattctc |
37863950 |
T |
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