View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20893_low_1 (Length: 522)

Name: NF20893_low_1
Description: NF20893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20893_low_1
NF20893_low_1
[»] chr8 (12 HSPs)
chr8 (100-522)||(1937443-1937865)
chr8 (100-180)||(1934546-1934625)
chr8 (33-93)||(34612493-34612553)
chr8 (380-478)||(1932346-1932444)
chr8 (76-113)||(1937267-1937304)
chr8 (33-69)||(1937240-1937276)
chr8 (33-84)||(26749633-26749684)
chr8 (37-85)||(3763611-3763659)
chr8 (33-96)||(24241608-24241671)
chr8 (33-99)||(5033020-5033086)
chr8 (42-80)||(28403246-28403284)
chr8 (57-98)||(26749503-26749544)
[»] chr7 (9 HSPs)
chr7 (33-96)||(47080348-47080411)
chr7 (33-96)||(28528477-28528540)
chr7 (33-96)||(47799985-47800048)
chr7 (33-96)||(19889119-19889182)
chr7 (34-84)||(8607970-8608020)
chr7 (33-69)||(30588489-30588525)
chr7 (33-84)||(6882153-6882204)
chr7 (42-84)||(32916108-32916150)
chr7 (57-98)||(47799855-47799896)
[»] chr2 (8 HSPs)
chr2 (33-96)||(374920-374983)
chr2 (33-96)||(8988783-8988846)
chr2 (33-93)||(29188583-29188643)
chr2 (33-96)||(23459931-23459994)
chr2 (33-94)||(3354848-3354909)
chr2 (34-88)||(36758947-36759001)
chr2 (57-97)||(375072-375112)
chr2 (34-94)||(2805306-2805366)
[»] chr4 (6 HSPs)
chr4 (33-96)||(37002336-37002399)
chr4 (33-96)||(56269162-56269225)
chr4 (33-96)||(5361370-5361433)
chr4 (33-96)||(5524374-5524437)
chr4 (33-84)||(28701919-28701970)
chr4 (57-96)||(36688145-36688184)
[»] chr3 (7 HSPs)
chr3 (33-96)||(31523753-31523816)
chr3 (33-96)||(42613007-42613070)
chr3 (33-96)||(49679355-49679418)
chr3 (33-97)||(27959033-27959097)
chr3 (33-84)||(3009178-3009229)
chr3 (51-93)||(20494566-20494608)
chr3 (54-96)||(28219542-28219584)
[»] scaffold0171 (1 HSPs)
scaffold0171 (33-96)||(17391-17454)
[»] chr5 (6 HSPs)
chr5 (33-99)||(36290526-36290592)
chr5 (33-96)||(2984475-2984538)
chr5 (33-96)||(3041392-3041455)
chr5 (33-98)||(11960675-11960740)
chr5 (33-96)||(31156474-31156537)
chr5 (35-88)||(27721084-27721137)
[»] chr1 (6 HSPs)
chr1 (33-96)||(30077729-30077792)
chr1 (60-96)||(52280142-52280178)
chr1 (33-84)||(10776033-10776084)
chr1 (38-84)||(35535057-35535103)
chr1 (34-84)||(40988644-40988694)
chr1 (42-84)||(46045626-46045668)
[»] chr6 (1 HSPs)
chr6 (33-96)||(24484806-24484869)


Alignment Details
Target: chr8 (Bit Score: 394; Significance: 0; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 100 - 522
Target Start/End: Original strand, 1937443 - 1937865
Alignment:
Q  100 aaaatgcatcctttatcatacattgaaaacacaaattttctttattttatgagggaagttattgtaccaaaatttattattaaagcatgtgctcaatttt 199  Q
    |||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1937443 aaaatgcatcttttgtcatacattgaaaacacaaattttctttattttatgagggaagttattgtaccaaaatttattattaaagcatgtgctcaatttt 1937542  T
Q  200 aaacttagaagaataaaataaaagagcgtannnnnnngacccaaacaaatgacaatagattactcaaatgaacttgtatcccttcaaatacatcaaaatt 299  Q
    ||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1937543 aaacttagaagaataaaataaaagagcgtatttttttgacccaaacaaatgacaatagattactcaaatgaacttgtatcccttcaaatacatcaaaatt 1937642  T
Q  300 agaaacacataagttgacaaatcctaaacttagaaataccttctaaacaaacaacctagaaaaaacaagttaaagcaacttagaaaatcaaatgaatgaa 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1937643 agaaacacataagttgacaaatcctaaacttagaaataccttctaaacaaacaacctagaaaaaacaagttaaagcaacttagaaaatcaaatgaatgaa 1937742  T
Q  400 cttatagtccttaaaatattgagaaacacataagataaaaacacttaaatagcctagaaaagcaagggaaacaagaatagcaaaggaatggacttataat 499  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1937743 cttatagtccttaaaatattgagaaacacataagataaaaacacttaaatagcctagaaaagcaagggaaacaagaatagcaaaggaatggacttataat 1937842  T
Q  500 ccttggaatactgataaacacaa 522  Q
    |||||||||||||||||||||||    
T  1937843 ccttggaatactgataaacacaa 1937865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 100 - 180
Target Start/End: Original strand, 1934546 - 1934625
Alignment:
Q  100 aaaatgcatcctttatcatacattgaaaacacaaattttctttattttatgagggaagttattgtaccaaaatttattatt 180  Q
    |||||||||| ||| ||||||||| ||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||    
T  1934546 aaaatgcatcatttgtcatacattaaaaacacaacttttctttattttatgagggaa-ttactgtaccaaaatttattatt 1934625  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 34612553 - 34612493
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaaatttataaatggagaagatattga 93  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  34612553 atgtgtctttatctctctaaatggaacaaatggaaaaatttataaatggagaggatattga 34612493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 380 - 478
Target Start/End: Original strand, 1932346 - 1932444
Alignment:
Q  380 tagaaaatcaaatgaatgaacttatagtccttaaaatattgagaaacacataagataaaaacacttaaatagcctagaaaagcaagggaaacaagaata 478  Q
    |||||||||||| |||||  ||||||||||||  |||| | ||||||||| |||||||||||| ||||  | ||||||||| |||||||||| ||||||    
T  1932346 tagaaaatcaaaggaatgggcttatagtccttggaatactaagaaacacagaagataaaaacatttaagcaacctagaaaaacaagggaaacgagaata 1932444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 113
Target Start/End: Original strand, 1937267 - 1937304
Alignment:
Q  76 aaatggagaagatattgacccattaaaatgcatccttt 113  Q
    ||||||||||||||||||||||||||||||||||||||    
T  1937267 aaatggagaagatattgacccattaaaatgcatccttt 1937304  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 33 - 69
Target Start/End: Original strand, 1937240 - 1937276
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaa 69  Q
    |||||||||||||||||||||||||||||||||||||    
T  1937240 atgtgtctctatctctctaaatggaacaaatggagaa 1937276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 26749633 - 26749684
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaaatttataaatggaga 84  Q
    |||||||| |||||||||||||| |||||||| | |||||||||||||||||    
T  26749633 atgtgtctttatctctctaaatgaaacaaatgaaaaaatttataaatggaga 26749684  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 85
Target Start/End: Original strand, 3763611 - 3763659
Alignment:
Q  37 gtctctatctctctaaatggaacaaatggagaaatttataaatggagaa 85  Q
    |||| ||||||| ||||||||||||||| |||||||||||||| |||||    
T  3763611 gtctttatctctttaaatggaacaaatgaagaaatttataaatagagaa 3763659  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 96
Target Start/End: Complemental strand, 24241671 - 24241608
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaaatttataaatggagaagatattgaccc 96  Q
    |||||||| ||||| | ||||| |||||||| |||||||||||||||  ||| |||||||||||    
T  24241671 atgtgtctttatctatgtaaatagaacaaattgagaaatttataaattaagaggatattgaccc 24241608  T

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Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 5033086 - 5033020
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaaatttataaatggagaagatattgacccatt 99  Q
    |||||||| |||||||| |||| ||| |||||||||||  |||||||||||| ||| || |||||||    
T  5033086 atgtgtctttatctctccaaattgaagaaatggagaaacatataaatggagaggatcttaacccatt 5033020  T

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Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 80
Target Start/End: Original strand, 28403246 - 28403284
Alignment:
Q  42 tatctctctaaatggaacaaatggagaaatttataaatg 80  Q
    ||||||||||||||||||||||| ||||| |||||||||    
T  28403246 tatctctctaaatggaacaaatgaagaaaattataaatg 28403284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 26749544 - 26749503
Alignment:
Q  57 aacaaatggagaaatttataaatggagaagatattgacccat 98  Q
    |||||||| | ||||||||||||||||| |||||||||||||    
T  26749544 aacaaatgaaaaaatttataaatggagaggatattgacccat 26749503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 33 - 96
Target Start/End: Complemental strand, 47080411 - 47080348
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaaatttataaatggagaagatattgaccc 96  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  47080411 atgtgtctctatctctctaaatagaacaaatggagaaatttataaatggagaagatattgaccc 47080348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 33 - 96
Target Start/End: Complemental strand, 28528540 - 28528477
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaaatttataaatggagaagatattgaccc 96  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||    
T  28528540 atgtgtctctatctctctaaatggaacaaatagagaaatttataaatggaaaagatattgaccc 28528477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 47799985 - 47800048
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaaatttataaatggagaagatattgaccc 96  Q
    |||||||| ||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||    
T  47799985 atgtgtctttatctctctaaatagaacaaatggaaaaatttataaatggagatgatattgaccc 47800048  T

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Target: chr7; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 19889119 - 19889182
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaaatttataaatggagaagatattgaccc 96  Q
    |||||||| ||||||||||||||||| ||||||||||||||||| ||||||| |||||| ||||    
T  19889119 atgtgtctttatctctctaaatggaataaatggagaaatttatagatggagaggatatttaccc 19889182  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 8608020 - 8607970
Alignment:
Q  34 tgtgtctctatctctctaaatggaacaaatggagaaatttataaatggaga 84  Q
    ||||||||||||| || |||||||||||||||||||| |||||||||||||    
T  8608020 tgtgtctctatctttccaaatggaacaaatggagaaagttataaatggaga 8607970  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 33 - 69
Target Start/End: Complemental strand, 30588525 - 30588489
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaa 69  Q
    |||||||| ||||||||||||||||||||||||||||    
T  30588525 atgtgtctttatctctctaaatggaacaaatggagaa 30588489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 6882153 - 6882204
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaaatttataaatggaga 84  Q
    |||||||| |||||||  |||||||||||||||||||| |||||||| ||||    
T  6882153 atgtgtctttatctcttcaaatggaacaaatggagaaagttataaattgaga 6882204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 84
Target Start/End: Complemental strand, 32916150 - 32916108
Alignment:
Q  42 tatctctctaaatggaacaaatggagaaatttataaatggaga 84  Q
    |||||||| |||||||| ||||||||||| |||||||||||||    
T  32916150 tatctctcaaaatggaagaaatggagaaagttataaatggaga 32916108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 57 - 98
Target Start/End: Complemental strand, 47799896 - 47799855
Alignment:
Q  57 aacaaatggagaaatttataaatggagaagatattgacccat 98  Q
    |||||||||| ||||||||||||||||| ||| |||||||||    
T  47799896 aacaaatggaaaaatttataaatggagaggatcttgacccat 47799855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 33 - 96
Target Start/End: Complemental strand, 374983 - 374920
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaaatttataaatggagaagatattgaccc 96  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  374983 atgtgtctttatctctctaaatggaacaaatggagaaatttataaatggagaagatattgaccc 374920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 33 - 96
Target Start/End: Complemental strand, 8988846 - 8988783
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaaatttataaatggagaagatattgaccc 96  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8988846 atgtgtctttatctctctaaatggaacaaatggagaaatttataaatggagaggatattgaccc 8988783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 33 - 93
Target Start/End: Complemental strand, 29188643 - 29188583
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaaatttataaatggagaagatattga 93  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  29188643 atgtgtctttatctctctaaatggaacaaatggagaaatttataaatggagaggatattga 29188583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 23459931 - 23459994
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaaatttataaatggagaagatattgaccc 96  Q
    |||||||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  23459931 atgtgtctttatctctctgaatggaacaaatggagaaatttataaatggagaggatattgaccc 23459994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 33 - 94
Target Start/End: Original strand, 3354848 - 3354909
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaaatttataaatggagaagatattgac 94  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||| | | |||||||||    
T  3354848 atgtgtctttatctctctaaatagaacaaatggagaaatttataaatgaaaaggatattgac 3354909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 34 - 88
Target Start/End: Original strand, 36758947 - 36759001
Alignment:
Q  34 tgtgtctctatctctctaaatggaacaaatggagaaatttataaatggagaagat 88  Q
    ||||||| ||||| ||||||||||||||||||| ||| |||||||| ||||||||    
T  36758947 tgtgtctttatctttctaaatggaacaaatggaaaaagttataaatagagaagat 36759001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 57 - 97
Target Start/End: Original strand, 375072 - 375112
Alignment:
Q  57 aacaaatggagaaatttataaatggagaagatattgaccca 97  Q
    |||||||||||||||||||||||||||| ||| || |||||    
T  375072 aacaaatggagaaatttataaatggagaggatcttaaccca 375112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 2805306 - 2805366
Alignment:
Q  34 tgtgtctctatctctctaaatggaacaaatggagaaatttataaatggagaagatattgac 94  Q
    ||||||| ||| ||| ||||||||| ||||||||| | | ||||||||||||||| |||||    
T  2805306 tgtgtctttatttctttaaatggaagaaatggagagactaataaatggagaagattttgac 2805366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 37002336 - 37002399
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaaatttataaatggagaagatattgaccc 96  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  37002336 atgtgtctttatctctctaaatggaacaaatggagaaatttataaatggagaggatattgaccc 37002399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 56269162 - 56269225
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaaatttataaatggagaagatattgaccc 96  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  56269162 atgtgtctttatctctctaaatggaacaaatggagaaatttataaatggagaggatattgaccc 56269225  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 33 - 96
Target Start/End: Complemental strand, 5361433 - 5361370
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaaatttataaatggagaagatattgaccc 96  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  5361433 atgtgtctttatctctctaaatggaacaaatgaagaaatttataaatggagaggatattgaccc 5361370  T

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Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 33 - 96
Target Start/End: Complemental strand, 5524437 - 5524374
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaaatttataaatggagaagatattgaccc 96  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||    
T  5524437 atgtgtctttatctctctaaatggaacaaatggaaaaatttataaatggagaggatattgaccc 5524374  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 28701919 - 28701970
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaaatttataaatggaga 84  Q
    |||||||| ||||||| |||||  ||||||||||||||||||||||||||||    
T  28701919 atgtgtctttatctctttaaataaaacaaatggagaaatttataaatggaga 28701970  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 96
Target Start/End: Complemental strand, 36688184 - 36688145
Alignment:
Q  57 aacaaatggagaaatttataaatggagaagatattgaccc 96  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  36688184 aacaaatggagaaatttataaatggagaggatcttgaccc 36688145  T

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Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 31523753 - 31523816
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaaatttataaatggagaagatattgaccc 96  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31523753 atgtgtctttatctctctaaatggaacaaatggagaaatttataaatggagaggatattgaccc 31523816  T

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Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 33 - 96
Target Start/End: Complemental strand, 42613070 - 42613007
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaaatttataaatggagaagatattgaccc 96  Q
    |||||||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  42613070 atgtgtctttatctctctaaatagaacaaatggagaaatttataaatggagaggatattgaccc 42613007  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 49679355 - 49679418
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaaatttataaatggagaagatattgaccc 96  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||    
T  49679355 atgtgtctttatctctctaaatgaaacaaatggagaaatttataaatggagaggatattgaccc 49679418  T

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Target: chr3; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 33 - 97
Target Start/End: Complemental strand, 27959097 - 27959033
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaaatttataaatggagaagatattgaccca 97  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  27959097 atgtgtatttatctctctaaatggaacaaatggagaaatttataaatggagagaatattgaccca 27959033  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 3009229 - 3009178
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaaatttataaatggaga 84  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  3009229 atgtgtctttatctctctaaatggaacaaatggagaaatttataaatggaga 3009178  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 93
Target Start/End: Original strand, 20494566 - 20494608
Alignment:
Q  51 aaatggaacaaatggagaaatttataaatggagaagatattga 93  Q
    |||||||||||||||||||||||||||||||||| ||| ||||    
T  20494566 aaatggaacaaatggagaaatttataaatggagaggatcttga 20494608  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 54 - 96
Target Start/End: Original strand, 28219542 - 28219584
Alignment:
Q  54 tggaacaaatggagaaatttataaatggagaagatattgaccc 96  Q
    ||||||||||||| ||||||||||||||||| ||| |||||||    
T  28219542 tggaacaaatggaaaaatttataaatggagaggatcttgaccc 28219584  T

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Target: scaffold0171 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0171
Description:

Target: scaffold0171; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 17391 - 17454
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaaatttataaatggagaagatattgaccc 96  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||||||    
T  17391 atgtgtctttatctctctaaatggaacaaatgaagaaatttataaatggagaggatattgaccc 17454  T

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Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 33 - 99
Target Start/End: Complemental strand, 36290592 - 36290526
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaaatttataaatggagaagatattgacccatt 99  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||||||| ||||||||||||||    
T  36290592 atgtgtctttatctctctaaatggaacaaatgaaaaaatttataaatggagaggatattgacccatt 36290526  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 2984475 - 2984538
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaaatttataaatggagaagatattgaccc 96  Q
    |||||||| ||||||| |||||| ||||||| |||||||||||||||| |||||||||||||||    
T  2984475 atgtgtctttatctctttaaatgaaacaaattgagaaatttataaatgaagaagatattgaccc 2984538  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 3041392 - 3041455
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaaatttataaatggagaagatattgaccc 96  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||| |||  ||||||||||    
T  3041392 atgtgtctttatctctctaaatggaacaaatgaaaaaatttataaatgaagagaatattgaccc 3041455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 33 - 98
Target Start/End: Original strand, 11960675 - 11960740
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaaatttataaatggagaagatattgacccat 98  Q
    |||||| | ||||||||||||||||||||||| |||||||||||||||| ||  ||||||| ||||    
T  11960675 atgtgtttttatctctctaaatggaacaaatgaagaaatttataaatggggagaatattgatccat 11960740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 96
Target Start/End: Complemental strand, 31156537 - 31156474
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaaatttataaatggagaagatattgaccc 96  Q
    |||||||| |||||||  ||||| |||||||||||||| |||||||| |||| ||| |||||||    
T  31156537 atgtgtctatatctcttcaaatgaaacaaatggagaaagttataaatagagatgatcttgaccc 31156474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 35 - 88
Target Start/End: Complemental strand, 27721137 - 27721084
Alignment:
Q  35 gtgtctctatctctctaaatggaacaaatggagaaatttataaatggagaagat 88  Q
    |||||| |||||||  ||||| |||||||||||||| ||||||||| |||||||    
T  27721137 gtgtctttatctcttcaaatgaaacaaatggagaaaattataaatgaagaagat 27721084  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 33 - 96
Target Start/End: Original strand, 30077729 - 30077792
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaaatttataaatggagaagatattgaccc 96  Q
    |||||||| ||| |||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  30077729 atgtgtctttatttctctaaatggaacaaatagagaaatttataaatggagaggatattgaccc 30077792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 52280142 - 52280178
Alignment:
Q  60 aaatggagaaatttataaatggagaagatattgaccc 96  Q
    ||||||||||||||||||||||||| |||||||||||    
T  52280142 aaatggagaaatttataaatggagaggatattgaccc 52280178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 33 - 84
Target Start/End: Complemental strand, 10776084 - 10776033
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaaatttataaatggaga 84  Q
    |||| ||| ||||| | ||||||||||||||||||||| |||||||||||||    
T  10776084 atgtatctttatctttttaaatggaacaaatggagaaaattataaatggaga 10776033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 84
Target Start/End: Complemental strand, 35535103 - 35535057
Alignment:
Q  38 tctctatctctctaaatggaacaaatggagaaatttataaatggaga 84  Q
    ||||||| |||||||||| |||||||||| ||| |||||||||||||    
T  35535103 tctctatatctctaaatgaaacaaatggaaaaagttataaatggaga 35535057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 34 - 84
Target Start/End: Complemental strand, 40988694 - 40988644
Alignment:
Q  34 tgtgtctctatctctctaaatggaacaaatggagaaatttataaatggaga 84  Q
    ||||||| |||||||| |||| ||| ||||||||||| |||||||||||||    
T  40988694 tgtgtctttatctctccaaatagaaaaaatggagaaagttataaatggaga 40988644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 84
Target Start/End: Complemental strand, 46045668 - 46045626
Alignment:
Q  42 tatctctctaaatggaacaaatggagaaatttataaatggaga 84  Q
    ||||| |||||||| |||||||||||||| |||||||||||||    
T  46045668 tatctttctaaatgaaacaaatggagaaagttataaatggaga 46045626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 33 - 96
Target Start/End: Complemental strand, 24484869 - 24484806
Alignment:
Q  33 atgtgtctctatctctctaaatggaacaaatggagaaatttataaatggagaagatattgaccc 96  Q
    |||||||| ||||||||||||||||||||||| | ||||||||||||||| | |||||||||||    
T  24484869 atgtgtctttatctctctaaatggaacaaatgaaaaaatttataaatggataggatattgaccc 24484806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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