View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20893_low_2 (Length: 435)

Name: NF20893_low_2
Description: NF20893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20893_low_2
NF20893_low_2
[»] chr3 (14 HSPs)
chr3 (13-243)||(33093921-33094151)
chr3 (237-419)||(33093719-33093903)
chr3 (13-217)||(37580840-37581044)
chr3 (26-217)||(33714875-33715066)
chr3 (306-419)||(33396702-33396815)
chr3 (16-217)||(36811047-36811248)
chr3 (17-217)||(37587574-37587774)
chr3 (305-419)||(36875764-36875878)
chr3 (16-90)||(27005919-27005993)
chr3 (19-217)||(33708994-33709192)
chr3 (380-419)||(33708809-33708848)
chr3 (13-92)||(37582363-37582442)
chr3 (382-419)||(36810814-36810851)
chr3 (380-420)||(33714643-33714683)
[»] chr2 (1 HSPs)
chr2 (153-217)||(32785792-32785856)
[»] chr7 (1 HSPs)
chr7 (151-204)||(18724389-18724442)
[»] chr8 (1 HSPs)
chr8 (151-217)||(18315293-18315359)
[»] chr5 (1 HSPs)
chr5 (151-217)||(41901555-41901621)
[»] chr4 (1 HSPs)
chr4 (151-216)||(8184051-8184116)


Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 33094151 - 33093921
Alignment:
Q  13 aatattagcagaaactttacgacaatgttgcaaattaatctctcttaggtgtttgcagtttgctaccactagcctaactccgtcctccgtgatatcacgg 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33094151 aatattagcagaaactttacgacaatgttgcaaattaatctctcttaggtgtttgcagtttactaccactagcctaactccgtcctccgtgatatcacgg 33094052  T
Q  113 caattttccacatcaagttgttgaagctgaggacaaaactttgagatcgcataaagtacttcatcatcaactcttgactttgacaagttcaagacctcta 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  33094051 caattttccacatcaagttgttgaagctgaggacaaaactttgagatcgcataaagtacttcatcatcaactcatgactttgacaagttcaaaacctcta 33093952  T
Q  213 gtttgctggatttgaagttgatccaaggtag 243  Q
    |||||||||||||||||||||||||||||||    
T  33093951 gtttgctggatttgaagttgatccaaggtag 33093921  T

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Target: chr3; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 237 - 419
Target Start/End: Complemental strand, 33093903 - 33093719
Alignment:
Q  237 aaggtagctccaaatatcgaacatcaccccatctccttaacaca--accaacatctttaaatatgccggggcaagagttcaaatcaagaagctgcagatt 334  Q
    |||||| |||||||||||||| ||||||||||||||||||||||  ||||| ||||||| |||||||||||||||||||||||||||||||||||| |||    
T  33093903 aaggtaactccaaatatcgaatatcaccccatctccttaacacattaccaatatctttagatatgccggggcaagagttcaaatcaagaagctgcaaatt 33093804  T
Q  335 gggaaacatgaaagcaaaaatatcgatgtttacatttagtagttgtgaattgttagccaaatggagagacttcacttgacggtat 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33093803 gggaaacatgaaagcaaaaatatcgatgtttacatttagtagttgtgaattgttagccaaatggagagacttcacttgacggtat 33093719  T

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Target: chr3; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 37581044 - 37580840
Alignment:
Q  13 aatattagcagaaactttacgacaatgttgcaaattaatctctcttaggtgtttgcagtttgctaccactagcctaactccgtcctccgtgatatcacgg 112  Q
    ||||||| |||| ||||||||||||| |||||||||||||||||| |||||| |||| ||| |||| ||||| || ||||| | ||| |||| ||||       
T  37581044 aatattaccagacactttacgacaattttgcaaattaatctctctcaggtgtatgcatttttctactactagtctcactcccttctctgtgacatcatta 37580945  T
Q  113 caattttccacatcaagttgttgaagctgaggacaaaactttgagatcgcataaagtacttcatcatcaactcttgactttgacaagttcaagacctcta 212  Q
    |||  ||  |  || |||||  ||||| |||| |||| | |||||||| |||| | ||||| |||||||| |||||| |||||||||||||| ||||| |    
T  37580944 caaaattgtaagtccagttgcagaagccgagggcaaatcattgagatcacatacaatactttatcatcaattcttgagtttgacaagttcaatacctcga 37580845  T
Q  213 gtttg 217  Q
    |||||    
T  37580844 gtttg 37580840  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 26 - 217
Target Start/End: Complemental strand, 33715066 - 33714875
Alignment:
Q  26 actttacgacaatgttgcaaattaatctctcttaggtgtttgcagtttgctaccactagcctaactccgtcctccgtgatatcacggcaattttccacat 125  Q
    |||||| |||||| |||||||||||||||||| ||||||  ||||||  ||| ||||||||| ||||| | |||||||| || | | |||| |||||  |    
T  33715066 actttaggacaatattgcaaattaatctctctcaggtgtacgcagttgtctaacactagcctcactcccttctccgtgacatgatgacaatcttccaggt 33714967  T
Q  126 caagttgttgaagctgaggacaaaactttgagatcgcataaagtacttcatcatcaactcttgactttgacaagttcaagacctctagtttg 217  Q
    | || ||| ||||| |||| |||  |||||| |||||||| | | |  ||||||||| |||||| |||||||||||||  ||||| ||||||    
T  33714966 ccagatgtagaagccgagggcaactctttgaaatcgcatacaatgcgccatcatcaattcttgagtttgacaagttcagcacctccagtttg 33714875  T

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Target: chr3; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 306 - 419
Target Start/End: Original strand, 33396702 - 33396815
Alignment:
Q  306 caagagttcaaatcaagaagctgcagattgggaaacatgaaagcaaaaatatcgatgtttacatttagtagttgtgaattgttagccaaatggagagact 405  Q
    |||||| |||||||||||||||||| ||| |||||||| |||| ||| ||   ||||| | ||| | | | ||||||||||| |||||||||||||||||    
T  33396702 caagagctcaaatcaagaagctgcatattaggaaacataaaagaaaacatggtgatgtcttcatcttgcaattgtgaattgtaagccaaatggagagact 33396801  T
Q  406 tcacttgacggtat 419  Q
    |||||||| |||||    
T  33396802 tcacttgatggtat 33396815  T

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Target: chr3; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 16 - 217
Target Start/End: Complemental strand, 36811248 - 36811047
Alignment:
Q  16 attagcagaaactttacgacaatgttgcaaattaatctctcttaggtgtttgcagtttgctaccactagcctaactccgtcctccgtgatatcacggcaa 115  Q
    ||||| ||| ||||||||||||  | |||||||||||||||| |||||  |||||||| |||||||| |||  ||||| | ||| |||| || |   |||    
T  36811248 attagtagacactttacgacaagatcgcaaattaatctctctcaggtgaatgcagttttctaccacttgccggactcccttctctgtgacataataacaa 36811149  T
Q  116 ttttccacatcaagttgttgaagctgaggacaaaactttgagatcgcataaagtacttcatcatcaactcttgactttgacaagttcaagacctctagtt 215  Q
    | |||||  ||||||||| ||||| |||| |||| ||||||||| ||||| ||| ||  || ||||| |||||| |  ||||||||||| ||||| ||||    
T  36811148 tgttccaggtcaagttgtagaagccgagggcaaatctttgagattgcatacagtgctctattatcaattcttgaatgggacaagttcaacacctccagtt 36811049  T
Q  216 tg 217  Q
    ||    
T  36811048 tg 36811047  T

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Target: chr3; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 217
Target Start/End: Complemental strand, 37587774 - 37587574
Alignment:
Q  17 ttagcagaaactttacgacaatgttgcaaattaatctctcttaggtgtttgcagtttgctaccactagcctaactccgtcctccgtgatatcacggcaat 116  Q
    |||||||| |||| |||||||| | |||||||||||||||| |||||| |||||||| | ||  ||||||| ||||| | ||| |||| ||||   || |    
T  37587774 ttagcagacacttcacgacaatatcgcaaattaatctctctcaggtgtatgcagttttccacagctagcctcactcccttctctgtgacatcataacagt 37587675  T
Q  117 tttccacatcaagttgttgaagctgaggacaaaactttgagatcgcataaagtacttcatcatcaactcttgactttgacaagttcaagacctctagttt 216  Q
     || ||  || | |||  |||||  ||| |||| ||||||||||||||| | ||||| |||||||| |||||| | |||||||||||| ||||| |||||    
T  37587674 gtttcaggtccaattgcagaagccaagggcaaatctttgagatcgcatacaatactttatcatcaattcttgagtgtgacaagttcaatacctccagttt 37587575  T
Q  217 g 217  Q
    |    
T  37587574 g 37587574  T

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Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 305 - 419
Target Start/End: Original strand, 36875764 - 36875878
Alignment:
Q  305 gcaagagttcaaatcaagaagctgcagattgggaaacatgaaagcaaaaatatcgatgtttacatttagtagttgtgaattgttagccaaatggagagac 404  Q
    ||||||| ||||||||||||| ||||  || |||||| | |||||||| || | ||||| | ||| | | |  |||||||||||||||||||||||||||    
T  36875764 gcaagagctcaaatcaagaagttgcatgttaggaaacgtaaaagcaaacatgttgatgtcttcatcttgcaaatgtgaattgttagccaaatggagagac 36875863  T
Q  405 ttcacttgacggtat 419  Q
    |||| |||| |||||    
T  36875864 ttcagttgatggtat 36875878  T

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Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 27005993 - 27005919
Alignment:
Q  16 attagcagaaactttacgacaatgttgcaaattaatctctcttaggtgtttgcagtttgctaccactagcctaac 90  Q
    ||||||||||||| ||||||||  |  || ||||||||||||||||| | |||| ||| ||||||||||||||||    
T  27005993 attagcagaaactctacgacaagatcccagattaatctctcttaggtatgtgcatttttctaccactagcctaac 27005919  T

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Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 33709192 - 33708994
Alignment:
Q  19 agcagaaactttacgacaatgttgcaaattaatctctcttaggtgtttgcagtttgctaccactagcctaactccgtcctccgtgatatcacggcaattt 118  Q
    |||||| ||||||||||||| || |||||||| |||||| |||||| |||| ||  ||| ||||||||| ||||| | |||||||| || | | ||   |    
T  33709192 agcagacactttacgacaatattccaaattaagctctctcaggtgtatgcatttgtctaacactagcctcactcccttctccgtgacatgatgacatcct 33709093  T
Q  119 tccacatcaagttgttgaagctgaggacaaaactttgagatcgcataaagtacttcatcatcaactcttgactttgacaagttcaagacctctagtttg 217  Q
    ||||  || || ||| ||||| |||| |||  ||||||||| ||||| | | |  ||||||||| |||||| | |||||||||||  ||||| ||||||    
T  33709092 tccaggtccagatgtagaagccgagggcaactctttgagattgcatacaatgcaccatcatcaattcttgagtctgacaagttcagcacctccagtttg 33708994  T

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Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 380 - 419
Target Start/End: Complemental strand, 33708848 - 33708809
Alignment:
Q  380 tgaattgttagccaaatggagagacttcacttgacggtat 419  Q
    |||||||| ||||||||||||||||||||||||| |||||    
T  33708848 tgaattgtgagccaaatggagagacttcacttgatggtat 33708809  T

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Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 92
Target Start/End: Complemental strand, 37582442 - 37582363
Alignment:
Q  13 aatattagcagaaactttacgacaatgttgcaaattaatctctcttaggtgtttgcagtttgctaccactagcctaactc 92  Q
    ||||| |||||| ||||||  ||||  |||||||||||||||||| | | || |||||||| ||||||||||||| ||||    
T  37582442 aatatcagcagacactttataacaacattgcaaattaatctctctcaagcgtatgcagttttctaccactagcctcactc 37582363  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 419
Target Start/End: Complemental strand, 36810851 - 36810814
Alignment:
Q  382 aattgttagccaaatggagagacttcacttgacggtat 419  Q
    |||| ||||||||||||||||||||||||||| |||||    
T  36810851 aatttttagccaaatggagagacttcacttgatggtat 36810814  T

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Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 380 - 420
Target Start/End: Complemental strand, 33714683 - 33714643
Alignment:
Q  380 tgaattgttagccaaatggagagacttcacttgacggtatt 420  Q
    |||||||| ||||||||||||||||||||| ||| ||||||    
T  33714683 tgaattgtgagccaaatggagagacttcacctgatggtatt 33714643  T

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Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 217
Target Start/End: Complemental strand, 32785856 - 32785792
Alignment:
Q  153 ttgagatcgcataaagtacttcatcatcaactcttgactttgacaagttcaagacctctagtttg 217  Q
    |||||||| |||||||| |||||||||||| |||||  | |||||||||||| ||||||||||||    
T  32785856 ttgagatcacataaagtgcttcatcatcaattcttgtatgtgacaagttcaacacctctagtttg 32785792  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 18724442 - 18724389
Alignment:
Q  151 ctttgagatcgcataaagtacttcatcatcaactcttgactttgacaagttcaa 204  Q
    ||||||||||||||| ||||||| |||||||| |||||| | ||||||||||||    
T  18724442 ctttgagatcgcatacagtactttatcatcaattcttgagtgtgacaagttcaa 18724389  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 18315359 - 18315293
Alignment:
Q  151 ctttgagatcgcataaagtacttcatcatcaactcttgactttgacaagttcaagacctctagtttg 217  Q
    |||||||||| |||| ||| |||||||||||||| |||  | |||||||||||| ||||| ||||||    
T  18315359 ctttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttg 18315293  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 41901621 - 41901555
Alignment:
Q  151 ctttgagatcgcataaagtacttcatcatcaactcttgactttgacaagttcaagacctctagtttg 217  Q
    ||||||||||  ||||||| |||||||||||||| |||  | |||||||||||| ||||| ||||||    
T  41901621 ctttgagatcatataaagtgcttcatcatcaacttttgtatatgacaagttcaacacctccagtttg 41901555  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 151 - 216
Target Start/End: Complemental strand, 8184116 - 8184051
Alignment:
Q  151 ctttgagatcgcataaagtacttcatcatcaactcttgactttgacaagttcaagacctctagttt 216  Q
    ||||||||| ||||| ||| ||  ||||||||||||||  | |||||||||||| |||||||||||    
T  8184116 ctttgagattgcatagagtgctatatcatcaactcttgtatgtgacaagttcaacacctctagttt 8184051  T

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