View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20893_low_5 (Length: 338)

Name: NF20893_low_5
Description: NF20893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20893_low_5
NF20893_low_5
[»] chr6 (18 HSPs)
chr6 (1-176)||(33058448-33058623)
chr6 (65-176)||(33388987-33389098)
chr6 (73-175)||(33643636-33643738)
chr6 (268-329)||(33058713-33058774)
chr6 (55-172)||(33263573-33263681)
chr6 (268-329)||(33286692-33286753)
chr6 (65-176)||(33359655-33359760)
chr6 (65-109)||(33286491-33286535)
chr6 (65-109)||(9167706-9167750)
chr6 (65-176)||(33401566-33401671)
chr6 (66-109)||(33410916-33410959)
chr6 (138-176)||(9167791-9167829)
chr6 (138-176)||(33286561-33286599)
chr6 (65-102)||(31561898-31561935)
chr6 (72-109)||(33272752-33272789)
chr6 (143-176)||(33272817-33272850)
chr6 (268-329)||(33401764-33401825)
chr6 (144-176)||(31561830-31561862)
[»] chr2 (2 HSPs)
chr2 (3-176)||(17439856-17440023)
chr2 (282-329)||(17439697-17439744)
[»] chr4 (4 HSPs)
chr4 (138-176)||(31477988-31478026)
chr4 (268-322)||(31497796-31497850)
chr4 (138-175)||(31483839-31483876)
chr4 (138-176)||(31527443-31527481)


Alignment Details
Target: chr6 (Bit Score: 148; Significance: 4e-78; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 33058448 - 33058623
Alignment:
Q  1 tgaacaaatcttaatttgttcgaaagacagcttgggaatcctaacatcgttgaaattcggtacctgatgaagagcaatctgagattactcatttttgaca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||    |||||||||||||||||||||||||||||||||||    
T  33058448 tgaacaaatcttaatttgttcgaaagacagcttgggaatcctaacatcgttgaaatatagttggcgatgaagagcaatctgagattactcatttttgaca 33058547  T
Q  101 agtgttcaaagtccgcctcttcatcttctttgtaatacaaaactatggcttcaacatgcttttcctaaagcattgc 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33058548 agtgttcaaagtccgcctcttcatcttctttgtaatacaaaactatggcttcaacatgcttttcctaaagcattgc 33058623  T

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Target: chr6; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 65 - 176
Target Start/End: Original strand, 33388987 - 33389098
Alignment:
Q  65 tgatgaagagcaatctgagattactcatttttgacaagtgttcaaagtccgcctcttcatcttctttgtaatacaaaactatggcttcaacatgcttttc 164  Q
    |||||| ||| ||||| |||||||||||||||||||| ||||||| |||| |||||||| | || |  | || |||||||||||||||||||||| ||||    
T  33388987 tgatgatgagtaatctaagattactcatttttgacaactgttcaacgtccacctcttcaacatcatcatcattcaaaactatggcttcaacatgcctttc 33389086  T
Q  165 ctaaagcattgc 176  Q
    ||||||||||||    
T  33389087 ctaaagcattgc 33389098  T

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Target: chr6; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 73 - 175
Target Start/End: Complemental strand, 33643738 - 33643636
Alignment:
Q  73 agcaatctgagattactcatttttgacaagtgttcaaagtccgcctcttcatcttctttgtaatacaaaactatggcttcaacatgcttttcctaaagca 172  Q
    |||||||| |||||||||||||||||||||| |||||  ||| | || ||||  ||||  || | |||||||||||||||||||||||||||||||||||    
T  33643738 agcaatctaagattactcatttttgacaagtattcaacttcctcttcatcataatcttcatattccaaaactatggcttcaacatgcttttcctaaagca 33643639  T
Q  173 ttg 175  Q
    |||    
T  33643638 ttg 33643636  T

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Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 268 - 329
Target Start/End: Original strand, 33058713 - 33058774
Alignment:
Q  268 ccatattctccaacataacatcatagagttgttctatggaccacaacctgctccatattctt 329  Q
    |||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||    
T  33058713 ccatattctccaacataacatcgtagagttgttctgtggaccacaacctgctccattttctt 33058774  T

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Target: chr6; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 55 - 172
Target Start/End: Original strand, 33263573 - 33263681
Alignment:
Q  55 attcggtacctgatgaagagcaatctgagattactcatttttgacaagtgttcaaagtccgcctcttcatcttctttgtaatacaaaactatggcttcaa 154  Q
    |||| ||||||||||| ||||||||| |||||||||||||||||||| ||||||| |||| ||||||||||         || |||||||||||||| ||    
T  33263573 attccgtacctgatgatgagcaatctaagattactcatttttgacaattgttcaacgtccacctcttcatc---------atccaaaactatggctttaa 33263663  T
Q  155 catgcttttcctaaagca 172  Q
    | ||||||||||||||||    
T  33263664 cttgcttttcctaaagca 33263681  T

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Target: chr6; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 268 - 329
Target Start/End: Original strand, 33286692 - 33286753
Alignment:
Q  268 ccatattctccaacataacatcatagagttgttctatggaccacaacctgctccatattctt 329  Q
    |||||||||||||||||||||  |||||||||||| |||||||||||||||||||| |||||    
T  33286692 ccatattctccaacataacattgtagagttgttctgtggaccacaacctgctccattttctt 33286753  T

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Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 65 - 176
Target Start/End: Original strand, 33359655 - 33359760
Alignment:
Q  65 tgatgaagagcaatctgagattactcatttttgacaagtgttcaaagtccgcctcttcatcttctttgtaatacaaaactatggcttcaacatgcttttc 164  Q
    |||||| ||||| ||| ||||||||||||||||||||||||||||||||| |     |||||| ||  | |  ||||||||||||||||||||| |||||    
T  33359655 tgatgatgagcactctaagattactcatttttgacaagtgttcaaagtccac-----catctt-ttcatgaatcaaaactatggcttcaacatgtttttc 33359748  T
Q  165 ctaaagcattgc 176  Q
    |||||| |||||    
T  33359749 ctaaagtattgc 33359760  T

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Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 33286491 - 33286535
Alignment:
Q  65 tgatgaagagcaatctgagattactcatttttgacaagtgttcaa 109  Q
    |||||| ||||||||| ||||||||||||||||||||||||||||    
T  33286491 tgatgatgagcaatctaagattactcatttttgacaagtgttcaa 33286535  T

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Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 109
Target Start/End: Original strand, 9167706 - 9167750
Alignment:
Q  65 tgatgaagagcaatctgagattactcatttttgacaagtgttcaa 109  Q
    |||||| ||||||||| ||| ||||||||||||||||||||||||    
T  9167706 tgatgatgagcaatctaagactactcatttttgacaagtgttcaa 9167750  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 176
Target Start/End: Original strand, 33401566 - 33401671
Alignment:
Q  65 tgatgaagagcaatctgagattactcatttttgacaagtgttcaaagtccgcctcttcatcttctttgtaatacaaaactatggcttcaacatgcttttc 164  Q
    |||||| ||| | ||| ||||||||||||||||| ||||||||||  ||| |||||||||    |||      ||||| |||||||||||||| ||||||    
T  33401566 tgatgatgagaagtctaagattactcatttttgataagtgttcaacatccacctcttcattacgttt------caaaagtatggcttcaacattcttttc 33401659  T
Q  165 ctaaagcattgc 176  Q
    ||||||||||||    
T  33401660 ctaaagcattgc 33401671  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 109
Target Start/End: Original strand, 33410916 - 33410959
Alignment:
Q  66 gatgaagagcaatctgagattactcatttttgacaagtgttcaa 109  Q
    ||||| ||||||||| ||||||||||||||||| ||||||||||    
T  33410916 gatgatgagcaatctaagattactcatttttgaaaagtgttcaa 33410959  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 176
Target Start/End: Original strand, 9167791 - 9167829
Alignment:
Q  138 caaaactatggcttcaacatgcttttcctaaagcattgc 176  Q
    ||||||||| ||||||||||||||||||||||| |||||    
T  9167791 caaaactattgcttcaacatgcttttcctaaagaattgc 9167829  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 176
Target Start/End: Original strand, 33286561 - 33286599
Alignment:
Q  138 caaaactatggcttcaacatgcttttcctaaagcattgc 176  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  33286561 caaaactaaggctttaacatgcttttcctaaagcattgc 33286599  T

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Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 31561935 - 31561898
Alignment:
Q  65 tgatgaagagcaatctgagattactcatttttgacaag 102  Q
    |||||| ||||||||| |||||||||||||||||||||    
T  31561935 tgatgatgagcaatctaagattactcatttttgacaag 31561898  T

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Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 109
Target Start/End: Original strand, 33272752 - 33272789
Alignment:
Q  72 gagcaatctgagattactcatttttgacaagtgttcaa 109  Q
    ||||||||| |||||||||||||||| |||||||||||    
T  33272752 gagcaatctaagattactcatttttgccaagtgttcaa 33272789  T

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Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 143 - 176
Target Start/End: Original strand, 33272817 - 33272850
Alignment:
Q  143 ctatggcttcaacatgcttttcctaaagcattgc 176  Q
    ||||||||||||||||||||||||| ||||||||    
T  33272817 ctatggcttcaacatgcttttcctatagcattgc 33272850  T

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Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 329
Target Start/End: Original strand, 33401764 - 33401825
Alignment:
Q  268 ccatattctccaacataacatcatagagttgttctatggaccacaacctgctccatattctt 329  Q
    |||||||||||| | ||||||| |||||||||| |   |||||||||||||||||| |||||    
T  33401764 ccatattctccatcttaacatcgtagagttgttttgcagaccacaacctgctccattttctt 33401825  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 144 - 176
Target Start/End: Complemental strand, 31561862 - 31561830
Alignment:
Q  144 tatggcttcaacatgcttttcctaaagcattgc 176  Q
    |||||| ||||||||||||||||||||||||||    
T  31561862 tatggcctcaacatgcttttcctaaagcattgc 31561830  T

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Target: chr2 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 3 - 176
Target Start/End: Complemental strand, 17440023 - 17439856
Alignment:
Q  3 aacaaatcttaatttgttcgaaagacagcttgggaatcctaacatcgttgaaattcggtacctgatgaagagcaatctgagattactcatttttgacaag 102  Q
    |||| |||||||||||||||||||||| |||||||||||| | || |||| | |  |||    ||||| ||||||||| ||||||||||||||||||||     
T  17440023 aacatatcttaatttgttcgaaagacaacttgggaatcctgagatagttgcagtatggttgacgatgatgagcaatctaagattactcatttttgacaaa 17439924  T
Q  103 tgttcaaagtccgcctcttcatcttctttgtaatacaaaactatggcttcaacatgcttttcctaaagcattgc 176  Q
    ||||||  |||| ||||||||   | |||      |||||||||||||||||||||||||||||||||||||||    
T  17439923 tgttcagcgtccacctcttcagtatattt------caaaactatggcttcaacatgcttttcctaaagcattgc 17439856  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 282 - 329
Target Start/End: Complemental strand, 17439744 - 17439697
Alignment:
Q  282 ataacatcatagagttgttctatggaccacaacctgctccatattctt 329  Q
    ||||||||||||||||||||| | |||||||||||||||||| |||||    
T  17439744 ataacatcatagagttgttctgtagaccacaacctgctccattttctt 17439697  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 138 - 176
Target Start/End: Complemental strand, 31478026 - 31477988
Alignment:
Q  138 caaaactatggcttcaacatgcttttcctaaagcattgc 176  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  31478026 caaaactatggcttcaacattcttttcctaaagcattgc 31477988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 322
Target Start/End: Complemental strand, 31497850 - 31497796
Alignment:
Q  268 ccatattctccaacataacatcatagagttgttctatggaccacaacctgctcca 322  Q
    |||||||||||||||||||||| |||| ||||||| |  ||||||||||||||||    
T  31497850 ccatattctccaacataacatcgtagaattgttctttcaaccacaacctgctcca 31497796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 175
Target Start/End: Complemental strand, 31483876 - 31483839
Alignment:
Q  138 caaaactatggcttcaacatgcttttcctaaagcattg 175  Q
    |||||||||||||||||||| |||||||||||||||||    
T  31483876 caaaactatggcttcaacattcttttcctaaagcattg 31483839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 138 - 176
Target Start/End: Original strand, 31527443 - 31527481
Alignment:
Q  138 caaaactatggcttcaacatgcttttcctaaagcattgc 176  Q
    |||||||||||||||||||| ||||||||||| ||||||    
T  31527443 caaaactatggcttcaacattcttttcctaaaacattgc 31527481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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