View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20893_low_8 (Length: 223)
Name: NF20893_low_8
Description: NF20893
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20893_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 17 - 206
Target Start/End: Complemental strand, 6463240 - 6463051
Alignment:
| Q |
17 |
gagatgaaacctgcatatattcaaataaaacatagtacttttcaaaataaaatcaatcaattcaaaccaagaaaatcacacacaaatgtgagtttcataa |
116 |
Q |
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| T |
6463240 |
gagatgaaacctgcatatattcaaataaaacatagaacttttcaaaataaaatcaatcaattcaaaccaagaaaatcacacacaaatgtgagtttcataa |
6463141 |
T |
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| Q |
117 |
ttattacaacttataaaaagtatgacaagatcgtttcatatttttcacacacatatgtatccatatttaacaagaaaatcacaatcatag |
206 |
Q |
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| T |
6463140 |
ttattacaccttataaaaagtatgacaagatcgtttcatatttttcaaacacatatgtatccatatttaacaagaaaatcacaatcatag |
6463051 |
T |
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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 46 - 83
Target Start/End: Original strand, 52951698 - 52951735
Alignment:
| Q |
46 |
acatagtacttttcaaaataaaatcaatcaattcaaac |
83 |
Q |
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| T |
52951698 |
acatagtacttttcaaaataaaaccaatcaattcaaac |
52951735 |
T |
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