View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20894_low_3 (Length: 280)
Name: NF20894_low_3
Description: NF20894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20894_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 36680718 - 36680572
Alignment:
| Q |
1 |
catcttctaactcctgtttcttcccgcgtctaacgaaattcaagcaaccattctcctaacagtaaaaatgtaannnnnnnn---gttattaattgttgtt |
97 |
Q |
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| T |
36680718 |
catcttctcactcctatttcttcccgcgtctcacgaaattcaagcaaccattctcctaacagtaaaactgtaatttttttttttgttattaattgttgtt |
36680619 |
T |
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| Q |
98 |
taatcttgttctgttattggttaatcatgttatgaattgggttattg |
144 |
Q |
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| T |
36680618 |
taatcttgttctgttattgattaatcatgttatgaattgggttattg |
36680572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 208 - 262
Target Start/End: Complemental strand, 36680510 - 36680456
Alignment:
| Q |
208 |
gttcactgtgagttgaatttttggtaaaaatttgatttttgaaagaaggggtgag |
262 |
Q |
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| T |
36680510 |
gttcactgtgagttgaatttttggtaaaaatttgatttttgaaagaaggggtgag |
36680456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 29416246 - 29416174
Alignment:
| Q |
1 |
catcttctaactcctgtttcttcccgcgtctaacgaaattcaagcaaccattctcctaacagtaaaaatgtaa |
73 |
Q |
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| T |
29416246 |
catcttctcactcctgtttcttcccgcgtttcaccaaattcaaccaaccattctcctaacggcaaaaatgtaa |
29416174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 259
Target Start/End: Complemental strand, 29416000 - 29415956
Alignment:
| Q |
215 |
gtgagttgaatttttggtaaaaatttgatttttgaaagaaggggt |
259 |
Q |
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| T |
29416000 |
gtgagttgaattttgattaaaaatttgatttttgaaagaaggggt |
29415956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 26931187 - 26931115
Alignment:
| Q |
1 |
catcttctaactcctgtttcttcccgcgtctaacgaaattcaagcaaccattctcctaacagtaaaaatgtaa |
73 |
Q |
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| T |
26931187 |
catcttctcacacctgtttcttcccgcatctcaccaaattcaaccatccattctcctaacagtaaaaacgtaa |
26931115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 138
Target Start/End: Original strand, 26939995 - 26940048
Alignment:
| Q |
85 |
attaattgttgtttaatcttgttctgttattggttaatcatgttatgaattggg |
138 |
Q |
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| T |
26939995 |
attaattgttgtttaatcttgttttgttattgattaattatgttattaattggg |
26940048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 26927616 - 26927561
Alignment:
| Q |
13 |
cctgtttcttcccgcgtctaacgaaattcaagcaaccattctcctaacagtaaaaa |
68 |
Q |
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| T |
26927616 |
cctgtttcttcctgcatctcaccaaattcaaccaaccattctcctaacagtaaaaa |
26927561 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 85 - 138
Target Start/End: Complemental strand, 26964323 - 26964270
Alignment:
| Q |
85 |
attaattgttgtttaatcttgttctgttattggttaatcatgttatgaattggg |
138 |
Q |
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| T |
26964323 |
attaattgttgtttaatcttgttttggtattgattaattatgttattaattggg |
26964270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 85 - 144
Target Start/End: Complemental strand, 26931099 - 26931039
Alignment:
| Q |
85 |
attaattgttgtttaatcttgttctg-ttattggttaatcatgttatgaattgggttattg |
144 |
Q |
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| T |
26931099 |
attaattgttgtttaatcttgttttgttttttgattaattatgttattaattgggtcattg |
26931039 |
T |
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