View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20894_low_4 (Length: 279)
Name: NF20894_low_4
Description: NF20894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20894_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 36680694 - 36680832
Alignment:
| Q |
1 |
gggaagaaacaggagttagaagatgaggcttcttcttgtctggttcgtcgtgatctgaattttctatttcgattctgaaaattcgaagaaaaatgaacaa |
100 |
Q |
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| T |
36680694 |
gggaagaaataggagtgagaagatgaggcttcttcttgtctggttcgtcgtgatctgaattttccatttcgattctgaaaatttgaagaaaaatgaacca |
36680793 |
T |
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| Q |
101 |
aaaggagcattaggaagataagtaattgtgagaggggtt |
139 |
Q |
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| T |
36680794 |
aaaggagcattaggaatgtgaggaattgtgagaggggtt |
36680832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 207 - 261
Target Start/End: Complemental strand, 36680510 - 36680456
Alignment:
| Q |
207 |
gttcactgtgagttgaatttttggtaaaaatttgatttttgaaagaaggggtgag |
261 |
Q |
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| T |
36680510 |
gttcactgtgagttgaatttttggtaaaaatttgatttttgaaagaaggggtgag |
36680456 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 5e-31; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 26931163 - 26931255
Alignment:
| Q |
1 |
gggaagaaacaggagttagaagatgaggcttcttcttgtctggttcgtcgtgatctgaattttctatttcgattctgaaaattcgaagaaaaa |
93 |
Q |
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| T |
26931163 |
gggaagaaacaggtgtgagaagatgcggcttcttcttgtctggttcgtcgtgatctgaattttccatttcgattctaaaaatttgaagaaaaa |
26931255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 4 - 98
Target Start/End: Complemental strand, 26939917 - 26939823
Alignment:
| Q |
4 |
aagaaacaggagttagaagatgaggcttcttcttgtctggttcgtcgtgatctgaattttctatttcgattctgaaaattcgaagaaaaatgaac |
98 |
Q |
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| T |
26939917 |
aagaaataggtgtgagaagatgtggcttcttcttgtttggttggtcgtgatctgaattttccatttcaattctgaaaatttgaagaaaaatgaac |
26939823 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 4 - 98
Target Start/End: Original strand, 26964511 - 26964605
Alignment:
| Q |
4 |
aagaaacaggagttagaagatgaggcttcttcttgtctggttcgtcgtgatctgaattttctatttcgattctgaaaattcgaagaaaaatgaac |
98 |
Q |
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| T |
26964511 |
aagaaacaagtgtgagaagatgcgtcttcttcttgtctggttggtcgatatctgaattttccatttcgattctgaaaatttgaagaaaaatgaac |
26964605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 112
Target Start/End: Original strand, 26927605 - 26927715
Alignment:
| Q |
2 |
ggaagaaacaggagttagaagatgaggcttcttcttgtctggttcgtcgtgatctgaattttctatttcgattctgaaaattcgaagaaaaatgaacaaa |
101 |
Q |
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|||||||||||| || | |||||| |||||||||||||||||| || ||||||||||||||| |||| ||||||||||| |||||||||||||| || |
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| T |
26927605 |
ggaagaaacaggtgtgaaaagatgctgcttcttcttgtctggttggtggtgatctgaattttccatttggattctgaaaagatgaagaaaaatgaaccaa |
26927704 |
T |
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| Q |
102 |
aaggagcatta |
112 |
Q |
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| | ||||||| |
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| T |
26927705 |
acgaagcatta |
26927715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 29416222 - 29416339
Alignment:
| Q |
1 |
gggaagaaacaggagttagaagatgaggcttcttcttgtctggttcgtcgtgatctgaattttctatttcgattctgaaaattcgaagaaaaatgaacaa |
100 |
Q |
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|||||||||||||||| ||||||||||||||||| |||| ||||||||||| ||||||||||| |||| | ||||| |||| |||||||| |||| | |
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| T |
29416222 |
gggaagaaacaggagtgagaagatgaggcttcttgttgttgggttcgtcgtggtctgaattttccatttgggttctgcgaattggaagaaaagggaacca |
29416321 |
T |
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| Q |
101 |
aaaggagcattaggaaga |
118 |
Q |
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|| | ||||||||||||| |
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| T |
29416322 |
aacgaagcattaggaaga |
29416339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 29416000 - 29415956
Alignment:
| Q |
214 |
gtgagttgaatttttggtaaaaatttgatttttgaaagaaggggt |
258 |
Q |
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| T |
29416000 |
gtgagttgaattttgattaaaaatttgatttttgaaagaaggggt |
29415956 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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