View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20894_low_8 (Length: 240)

Name: NF20894_low_8
Description: NF20894
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20894_low_8
NF20894_low_8
[»] chr4 (7 HSPs)
chr4 (1-224)||(38214737-38214960)
chr4 (1-224)||(38227160-38227383)
chr4 (1-224)||(38248775-38248998)
chr4 (1-215)||(38238689-38238903)
chr4 (1-221)||(38243627-38243847)
chr4 (1-224)||(38253890-38254113)
chr4 (1-179)||(38220779-38220957)
[»] chr6 (2 HSPs)
chr6 (1-221)||(17455390-17455610)
chr6 (1-187)||(17434290-17434476)
[»] chr2 (2 HSPs)
chr2 (43-179)||(11485202-11485338)
chr2 (43-179)||(11478931-11479067)
[»] chr1 (1 HSPs)
chr1 (42-179)||(21546636-21546773)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 2e-97; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 38214737 - 38214960
Alignment:
Q  1 cacttgcactcagtgcaccctaatttatcctctgcgcctcgcgtatcaatggcatgaacattaagcaaccatttatcctcaaaccctagtggaatctctt 100  Q
    ||||| ||||| ||||||||||| |||||||||||||| |||||||| |||||||||||||||| ||||||||| ||||||||||||  |||||||||||    
T  38214737 cacttacactcggtgcaccctaacttatcctctgcgccgcgcgtatcgatggcatgaacattaaccaaccatttctcctcaaacccttctggaatctctt 38214836  T
Q  101 caggattacctatctctataccgaaaggatccggaatatctgttgttgttcctcgtgtttcggatccaaggccaaagtactgtggaatgacattttcttg 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38214837 caggattacctatctctataccaaaaggatccggaatatctgttgctgttcctcgtgtttcggatccaaggccaaagtactgtggaatgacattttcttg 38214936  T
Q  201 acatatgccactgtttctcacaag 224  Q
    ||||||||||||||||||||||||    
T  38214937 acatatgccactgtttctcacaag 38214960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 38227160 - 38227383
Alignment:
Q  1 cacttgcactcagtgcaccctaatttatcctctgcgcctcgcgtatcaatggcatgaacattaagcaaccatttatcctcaaaccctagtggaatctctt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38227160 cacttgcactcagtgcaccctaatttatcctctgcgcctcgcgtatcaatggcatgaacattaagcaaccatttatcctcaaacccttgtggaatctctt 38227259  T
Q  101 caggattacctatctctataccgaaaggatccggaatatctgttgttgttcctcgtgtttcggatccaaggccaaagtactgtggaatgacattttcttg 200  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| || ||||| |||||||| |||| |||  ||||| | ||    
T  38227260 caggattacctatctctataccgaaaggatctggaatatctgttgtcgttcctcgtgtttctgacccaagtccaaagtattgtgaaatagcatttccctg 38227359  T
Q  201 acatatgccactgtttctcacaag 224  Q
     |||||||||||||| || |||||    
T  38227360 gcatatgccactgttccttacaag 38227383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 38248775 - 38248998
Alignment:
Q  1 cacttgcactcagtgcaccctaatttatcctctgcgcctcgcgtatcaatggcatgaacattaagcaaccatttatcctcaaaccctagtggaatctctt 100  Q
    ||||| || ||||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||||| ||||||||||||  |||||||||||    
T  38248775 cacttacattcagtgcaccctaatttatcctctgtgccacgcgtatcgatggcatgaacattaagcaaccatttctcctcaaacccttctggaatctctt 38248874  T
Q  101 caggattacctatctctataccgaaaggatccggaatatctgttgttgttcctcgtgtttcggatccaaggccaaagtactgtggaatgacattttcttg 200  Q
    ||||| ||||| |||||||||| |||||||| |||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||  |||| | ||    
T  38248875 caggactacctgtctctataccaaaaggatctggaatatctgttgtcgttcctcgtgtttctgatccaaggccaaagtattgtggaatggtatttccctg 38248974  T
Q  201 acatatgccactgtttctcacaag 224  Q
     |||||||||||||| || |||||    
T  38248975 gcatatgccactgttccttacaag 38248998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 38238689 - 38238903
Alignment:
Q  1 cacttgcactcagtgcaccctaatttatcctctgcgcctcgcgtatcaatggcatgaacattaagcaaccatttatcctcaaaccctagtggaatctctt 100  Q
    ||||| ||||||||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||||| || | |||||||  |||||||||||    
T  38238689 cacttacactcagtgcaccctaatttatcctttgtgcctcgcgtatcgatggcatgaacattaagcaaccatttttcgtgaaacccttctggaatctctt 38238788  T
Q  101 caggattacctatctctataccgaaaggatccggaatatctgttgttgttcctcgtgtttcggatccaaggccaaagtactgtggaatgacattttcttg 200  Q
    ||||||| |||||||||||||||||||||||||||||||| || |  ||||| |||||||||||||||||||||||||| |||  ||    |||| ||||    
T  38238789 caggattgcctatctctataccgaaaggatccggaatatcggtcgccgttccacgtgtttcggatccaaggccaaagtattgtccaagagtatttccttg 38238888  T
Q  201 acatatgccactgtt 215  Q
    |||||||||||||||    
T  38238889 acatatgccactgtt 38238903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 38243627 - 38243847
Alignment:
Q  1 cacttgcactcagtgcaccctaatttatcctctgcgcctcgcgtatcaatggcatgaacattaagcaaccatttatcctcaaaccctagtggaatctctt 100  Q
    ||||| ||||||||||||||||| ||||||||| |||| || ||||||||||||||||||||||||| ||||||||||||  |||||  || || ||||     
T  38243627 cacttacactcagtgcaccctaacttatcctctacgccacgtgtatcaatggcatgaacattaagcacccatttatcctcggacccttctgaaacctctg 38243726  T
Q  101 caggattacctatctctataccgaaaggatccggaatatctgttgttgttcctcgtgtttcggatccaaggccaaagtactgtggaatgacattttcttg 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |||  ||    |||| | ||    
T  38243727 caggattacctatctctataccaaaaggatccggaatatctgttgctgttcctcgtgtttcggatccaatgccaaagtattgtccaagagtatttccctg 38243826  T
Q  201 acatatgccactgtttctcac 221  Q
    ||||||||||||||| |||||    
T  38243827 acatatgccactgttcctcac 38243847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 38253890 - 38254113
Alignment:
Q  1 cacttgcactcagtgcaccctaatttatcctctgcgcctcgcgtatcaatggcatgaacattaagcaaccatttatcctcaaaccctagtggaatctctt 100  Q
    ||||| ||||| ||||||||||| ||||||||||| ||||| ||||| |||||||||||||||| || |||||| || |||||||||  ||||| ||||     
T  38253890 cacttacactcggtgcaccctaacttatcctctgcacctcgtgtatcgatggcatgaacattaaccatccatttctcatcaaacccttctggaacctctg 38253989  T
Q  101 caggattacctatctctataccgaaaggatccggaatatctgttgttgttcctcgtgtttcggatccaaggccaaagtactgtggaatgacattttcttg 200  Q
    |||||||||||| ||||||||| ||||| ||||||||||||||   |||||||| |||||||||||||||||||||||| |||  ||    |||| | ||    
T  38253990 caggattacctacctctataccaaaagggtccggaatatctgtcagtgttcctcttgtttcggatccaaggccaaagtattgtccaagataatttccctg 38254089  T
Q  201 acatatgccactgtttctcacaag 224  Q
     |||||||||||||||||||||||    
T  38254090 gcatatgccactgtttctcacaag 38254113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 38220779 - 38220957
Alignment:
Q  1 cacttgcactcagtgcaccctaatttatcctctgcgcctcgcgtatcaatggcatgaacattaagcaaccatttatcctcaaaccctagtggaatctctt 100  Q
    |||||||||||||| |||||||| ||||||||  |||| |||||||||||||||||||| || |||| |||| | |||||| |||||  ||||||||||     
T  38220779 cacttgcactcagtacaccctaacttatcctccacgccgcgcgtatcaatggcatgaacgtttagcatccatatctcctcatacccttctggaatctctg 38220878  T
Q  101 caggattacctatctctataccgaaaggatccggaatatctgttgttgttcctcgtgtttcggatccaaggccaaagta 179  Q
    |||||||||||||||||||||| ||||||||||||||||| || |  || ||||||||||| |||||||| ||||||||    
T  38220879 caggattacctatctctataccaaaaggatccggaatatcagtcgccgtccctcgtgtttcagatccaagcccaaagta 38220957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 97; Significance: 8e-48; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 17455390 - 17455610
Alignment:
Q  1 cacttgcactcagtgcaccctaatttatcctctgcgcctcgcgtatcaatggcatgaacattaagcaaccatttatcctcaaaccctagtggaatctctt 100  Q
    ||||||||||||||||||||||  ||||||||| |||| || ||||| |||||||||| ||||| ||||||||| ||||||||||||  |||||| |||     
T  17455390 cacttgcactcagtgcaccctagcttatcctctacgccacgtgtatcgatggcatgaatattaaacaaccatttctcctcaaacccttctggaatttctg 17455489  T
Q  101 caggattacctatctctataccgaaaggatccggaatatctgttgttgttcctcgtgtttcggatccaaggccaaagtactgtggaatgacattttcttg 200  Q
      |||||||| ||||| ||||| ||||||||||||||||| || | ||||||||||||||| ||||||||||| || ||||||||||  | |||| ||||    
T  17455490 ttggattacccatctccataccaaaaggatccggaatatcggtcggtgttcctcgtgtttctgatccaaggccgaaatactgtggaagaatatttccttg 17455589  T
Q  201 acatatgccactgtttctcac 221  Q
     || ||||||||||| |||||    
T  17455590 gcaaatgccactgttcctcac 17455610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 187
Target Start/End: Original strand, 17434290 - 17434476
Alignment:
Q  1 cacttgcactcagtgcaccctaatttatcctctgcgcctcgcgtatcaatggcatgaacattaagcaaccatttatcctcaaaccctagtggaatctctt 100  Q
    |||||||| |||||||||||||| ||||||||| |||| || ||||| |||||||||| ||||| |||||| || ||||||||||||  |||||| |||     
T  17434290 cacttgcattcagtgcaccctaacttatcctctacgccacgtgtatcgatggcatgaatattaaacaaccacttctcctcaaacccttctggaatatctg 17434389  T
Q  101 caggattacctatctctataccgaaaggatccggaatatctgttgttgttcctcgtgtttcggatccaaggccaaagtactgtggaa 187  Q
    |||||||||||||||||||||| |||||||| ||||| || || |  |||||||||||||||||||||||||| || ||||||||||    
T  17434390 caggattacctatctctataccaaaaggatctggaatgtcagtcggcgttcctcgtgtttcggatccaaggccgaaatactgtggaa 17434476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 179
Target Start/End: Complemental strand, 11485338 - 11485202
Alignment:
Q  43 gtatcaatggcatgaacattaagcaaccatttatcctcaaaccctagtggaatctcttcaggattacctatctctataccgaaaggatccggaatatctg 142  Q
    |||||||| |||||||||||||  |||||||| ||| || |||||  |||||| |||||||||||||| |  ||||| ||  |||| || ||||||| ||    
T  11485338 gtatcaatagcatgaacattaataaaccatttttccacatacccttttggaatttcttcaggattaccaacttctatgccataagggtcaggaatatatg 11485239  T
Q  143 ttgttgttcctcgtgtttcggatccaaggccaaagta 179  Q
    |  |||| |||| |||||| |||||||| ||| ||||    
T  11485238 tatttgtgcctcttgtttcagatccaagaccatagta 11485202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 179
Target Start/End: Complemental strand, 11479067 - 11478931
Alignment:
Q  43 gtatcaatggcatgaacattaagcaaccatttatcctcaaaccctagtggaatctcttcaggattacctatctctataccgaaaggatccggaatatctg 142  Q
    |||||||| ||||||||||||| ||||||||| ||| || |||||  |||||| |||||| ||||||| |  ||||| ||  |||| |  ||||||| ||    
T  11479067 gtatcaatagcatgaacattaatcaaccatttttccacatacccttttggaatttcttcatgattaccaacttctattccataaggttgaggaatatatg 11478968  T
Q  143 ttgttgttcctcgtgtttcggatccaaggccaaagta 179  Q
    |  |||| |||| |||||| |||||||| ||| ||||    
T  11478967 tatttgtgcctcttgtttcagatccaagaccatagta 11478931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 179
Target Start/End: Complemental strand, 21546773 - 21546636
Alignment:
Q  42 cgtatcaatggcatgaacattaagcaaccatttatcctcaaaccctagtggaatctcttcaggattacctatctctataccgaaaggatccggaatatct 141  Q
    ||||||||| ||||||||||| | ||||||||| ||| || |||||  |||||| ||  |||||||||| |  ||||||||  |||| || ||||||| |    
T  21546773 cgtatcaattgcatgaacattgatcaaccatttctccacatacccttttggaatttcagcaggattaccaacttctataccataagggtctggaatatat 21546674  T
Q  142 gttgttgttcctcgtgtttcggatccaaggccaaagta 179  Q
    ||  |||| | || |||||| |||||||| ||| ||||    
T  21546673 gtatttgtgcttcttgtttctgatccaagaccatagta 21546636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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