View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20895_high_1 (Length: 662)
Name: NF20895_high_1
Description: NF20895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20895_high_1 |
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| [»] scaffold0009 (2 HSPs) |
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| [»] scaffold0117 (1 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 205 - 605
Target Start/End: Original strand, 101948 - 102348
Alignment:
| Q |
205 |
tggtatcataccaaacataaagtcttctgcaaagtacagacaaggcctcaaggcttgaattaaatatgtatgcaaaactgaatagatgtttatacnnnnn |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
101948 |
tggtatcataccaaacataaagtcttctgcaaagtacagacaaggcctcaaggcttgaattaaatatgtatgcaaaactgaaaagatgtttatacaaaaa |
102047 |
T |
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| Q |
305 |
nnngtgaattaaatatgtttccaaggtctttctgctaggtttacacattctttgtgcctataacaaccaacaagatgatcaatagtcaatcctgcagctt |
404 |
Q |
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| T |
102048 |
aaagtgaattaaatatgtttccaaggtctttctgctaggtttacacattctttgtgcctataacaaccaacaagatgatcaatagtcaatcctgcaactt |
102147 |
T |
|
| Q |
405 |
gcataaaagagtaaacaatcaccggacccaaatatctaaacccgcgttttaataagtccctgcttatggcatctgcttttggtgtccttaatggaacatc |
504 |
Q |
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| T |
102148 |
gcataaaagagtaaacaatcactggacccaaatatctaaacccgcgttttaataagtccttgcttatggcatctgcttttggtgtcctcaatggaacatc |
102247 |
T |
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| Q |
505 |
tcttgaatatctgtatttgttaatcactggtttgtgattcacgtaactccatatatagctactgaatgatccaaattccctcctaatctgtagaaaaaga |
604 |
Q |
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| T |
102248 |
tcttgagtatctgtatttgttaatcactggtttgtgattcacgtaactccatatatagctactgaatgatccaaattccctcctaatctgtagaaaaaga |
102347 |
T |
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| Q |
605 |
a |
605 |
Q |
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| T |
102348 |
a |
102348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 101958 - 101725
Alignment:
| Q |
1 |
gtatgatactaatataatgagattgaaaatataatatgatttcaaattataactctatat------------------tatagttaatttacttttaa-- |
80 |
Q |
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| T |
101958 |
gtatgataccaatataatgagattgaaaatataatatgatttcaaattataactctatatgatttggttgaccattattatagttaatttacttttaata |
101859 |
T |
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| Q |
81 |
-caacccagaagaggaacaattgtgaacacaaaataatcaaaacacaattgtttaattaatcaaggaaatcacaatggaaatataacattgaatattgtt |
179 |
Q |
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| T |
101858 |
acaacccaggagaggaacaattgtgaacacaaaataatcaaagcacaattgtttaattaatcaaggaaatcacaatggaaatataacattgaatattgtt |
101759 |
T |
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| Q |
180 |
taatatgtgataaatggttcaattatggtatcat |
213 |
Q |
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| T |
101758 |
taatatgtgataaattgttcaatcatggtatcat |
101725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 90; Significance: 4e-43; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 324 - 585
Target Start/End: Complemental strand, 27434344 - 27434083
Alignment:
| Q |
324 |
tccaaggtctttctgctaggtttacacattctttgtgcctataacaaccaacaagatgatcaatagtcaatcctgcagcttgcataaaagagtaaacaat |
423 |
Q |
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| T |
27434344 |
tccaaggtctttctgctaggcttacacattcactatgtcgataacaatctacaagatgatcaatggtcaatcctgcagcttgcataaaagagtgcactat |
27434245 |
T |
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| Q |
424 |
caccggacccaaatatctaaacccgcgttttaataagtccctgcttatggcatctgcttttggtgtccttaatggaacatctcttgaatatctgtatttg |
523 |
Q |
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||| || |||| | | | ||| || ||||| | | |||| |||||| || ||||||||||| |||||||||| |||| ||||| ||| |||||||| |
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| T |
27434244 |
cactggtcccacaaaccgaaatccacgtttaaccatgtccttgcttagagcttctgcttttggactccttaatgggacatttcttgggtatttgtatttg |
27434145 |
T |
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| Q |
524 |
ttaatcactggtttgtgattcacgtaactccatatatagctactgaatgatccaaattccct |
585 |
Q |
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| T |
27434144 |
ttaattattggtttatgatttacaaaactccatatatagctactaaatgatccacattccct |
27434083 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 132 - 202
Target Start/End: Original strand, 10281348 - 10281418
Alignment:
| Q |
132 |
ttaattaatcaaggaaatcacaatggaaatataacattgaatattgtttaatatgtgataaatggttcaat |
202 |
Q |
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| T |
10281348 |
ttaattaatcaaggaaatcacaatgaaaatataacattgaatattgtttaatatgtgataaatggttcaat |
10281418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 48014451 - 48014499
Alignment:
| Q |
135 |
attaatcaaggaaatcacaatggaaatataacattgaatattgtttaat |
183 |
Q |
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| T |
48014451 |
attaatcaagaaaatcacaatcgaaatattttattgaatattgtttaat |
48014499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117 (Bit Score: 58; Significance: 5e-24; HSPs: 1)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 13593 - 13662
Alignment:
| Q |
133 |
taattaatcaaggaaatcacaatggaaatataacattgaatattgtttaatatgtgataaatggttcaat |
202 |
Q |
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| T |
13593 |
taattaatcaaggaaattacaacggaaatataacattgaatattgattaatatgtgataaatggttcaat |
13662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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