View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20895_high_10 (Length: 298)
Name: NF20895_high_10
Description: NF20895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20895_high_10 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 107 - 281
Target Start/End: Original strand, 28121892 - 28122066
Alignment:
| Q |
107 |
gagtatacattgcatatacattagaagattagaaagaaacaaaaagttacacgcacaattgatcatagagatattttgaaaatcaatacagcaaagtagc |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28121892 |
gagtatacattgcatatacattagaagattagaaagaaacaaaaagttacacacacaatcgatcatagagatattttgaaaatcaatacagcaaagtagc |
28121991 |
T |
|
| Q |
207 |
gtcatggcaagatataattacatgcatgcgtaaaacttgtttacattgatagtatatacaagttaagttctatat |
281 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28121992 |
gtcatggcaagatataattacatgcatgcgtaaaacttgtttacattgatagtatatacaagttaagttctatat |
28122066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 44
Target Start/End: Original strand, 28121800 - 28121829
Alignment:
| Q |
15 |
ttattctcaaattagctcggggttctcaac |
44 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
28121800 |
ttattctcaaattagctcggggttctcaac |
28121829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University