View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20895_high_11 (Length: 293)
Name: NF20895_high_11
Description: NF20895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20895_high_11 |
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| [»] scaffold0009 (1 HSPs) |
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| [»] scaffold0117 (1 HSPs) |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: scaffold0009 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 101958 - 101648
Alignment:
| Q |
1 |
gtatgatactaatataatgagattgaaaatataatatgatttcaaattataactctatat------------------tatagttaatttacttttaa-- |
80 |
Q |
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| T |
101958 |
gtatgataccaatataatgagattgaaaatataatatgatttcaaattataactctatatgatttggttgaccattattatagttaatttacttttaata |
101859 |
T |
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| Q |
81 |
-caacccagaagaggaacaattgtgaacacaaaataatcaaaacacaattgtttaattaatcaaggaaatcacaatggaaatataacattgaatattgtt |
179 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
101858 |
acaacccaggagaggaacaattgtgaacacaaaataatcaaagcacaattgtttaattaatcaaggaaatcacaatggaaatataacattgaatattgtt |
101759 |
T |
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| Q |
180 |
taatatgtgataaatggttcaattatggtatcatccaatcaatcccctttcatatattgctccaagtgtatcaaccttaacctcgacaggaaccacgttc |
279 |
Q |
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| T |
101758 |
taatatgtgataaattgttcaatcatggtatcatccaatcaatcccctttcatatattgctcgaagagtatcaaccttaacctcgacaagaaccacgttc |
101659 |
T |
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| Q |
280 |
ataacccaaac |
290 |
Q |
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||||||||||| |
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| T |
101658 |
ataacccaaac |
101648 |
T |
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Target: chr7 (Bit Score: 67; Significance: 8e-30; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 132 - 202
Target Start/End: Original strand, 10281348 - 10281418
Alignment:
| Q |
132 |
ttaattaatcaaggaaatcacaatggaaatataacattgaatattgtttaatatgtgataaatggttcaat |
202 |
Q |
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| T |
10281348 |
ttaattaatcaaggaaatcacaatgaaaatataacattgaatattgtttaatatgtgataaatggttcaat |
10281418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 228 - 282
Target Start/End: Original strand, 10281461 - 10281515
Alignment:
| Q |
228 |
ttcatatattgctccaagtgtatcaaccttaacctcgacaggaaccacgttcata |
282 |
Q |
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| T |
10281461 |
ttcatatattgctccaagtgtatcaaccttagcatggacaggaaccacgttcata |
10281515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 183
Target Start/End: Original strand, 48014451 - 48014499
Alignment:
| Q |
135 |
attaatcaaggaaatcacaatggaaatataacattgaatattgtttaat |
183 |
Q |
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| T |
48014451 |
attaatcaagaaaatcacaatcgaaatattttattgaatattgtttaat |
48014499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 133 - 202
Target Start/End: Original strand, 13593 - 13662
Alignment:
| Q |
133 |
taattaatcaaggaaatcacaatggaaatataacattgaatattgtttaatatgtgataaatggttcaat |
202 |
Q |
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| T |
13593 |
taattaatcaaggaaattacaacggaaatataacattgaatattgattaatatgtgataaatggttcaat |
13662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 213 - 290
Target Start/End: Original strand, 45784912 - 45784989
Alignment:
| Q |
213 |
tccaatcaatcccctttcatatattgctccaagtgtatcaaccttaacctcgacaggaaccacgttcataacccaaac |
290 |
Q |
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| T |
45784912 |
tccaatcagtcccctttcatatattgccccaagggtgtcaaccttagcctggacaggaaccacattcataacccaaac |
45784989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 213 - 289
Target Start/End: Original strand, 64236 - 64312
Alignment:
| Q |
213 |
tccaatcaatcccctttcatatattgctccaagtgtatcaaccttaacctcgacaggaaccacgttcataacccaaa |
289 |
Q |
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||||||||| || ||||||||||||||||||||||||||||| ||| | | | |||||| || ||||||||||||| |
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| T |
64236 |
tccaatcaaccctctttcatatattgctccaagtgtatcaactttagcttgaataggaacaacattcataacccaaa |
64312 |
T |
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