View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20895_high_2 (Length: 580)

Name: NF20895_high_2
Description: NF20895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20895_high_2
NF20895_high_2
[»] chr1 (8 HSPs)
chr1 (18-572)||(40689554-40690108)
chr1 (151-227)||(34710513-34710589)
chr1 (268-320)||(34714059-34714111)
chr1 (151-217)||(34714219-34714285)
chr1 (386-450)||(34710335-34710399)
chr1 (386-450)||(34713959-34714023)
chr1 (378-418)||(27509163-27509203)
chr1 (386-450)||(34406576-34406640)
[»] chr7 (2 HSPs)
chr7 (367-443)||(7687870-7687946)
chr7 (373-445)||(40243778-40243850)
[»] chr2 (3 HSPs)
chr2 (365-439)||(41234713-41234787)
chr2 (366-418)||(35505956-35506008)
chr2 (149-218)||(35506177-35506246)
[»] chr4 (2 HSPs)
chr4 (369-458)||(20926000-20926089)
chr4 (149-226)||(20925729-20925806)


Alignment Details
Target: chr1 (Bit Score: 523; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 18 - 572
Target Start/End: Complemental strand, 40690108 - 40689554
Alignment:
Q  18 aggttgagatccaaatccaaagacaaaacattccttttctttctaggatgatcttcatcaggttccaaagccattggtgtcaaagagagtgtagtgttgg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||    
T  40690108 aggttgagatccaaatccaaagacaaaacattccttttctttctaggatgatcttcatcaggttccaaagccattgttgtcaaagagagtgtggtgttgg 40690009  T
Q  118 ctgcagatgttcccaccggcgcgcggtgacgcctcatatggccacctagtgcttgaccagatgtgaattcagaaccacaaatggaacactcatgaacctt 217  Q
    ||||||| ||||||||||| || ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40690008 ctgcagaagttcccaccggtgcacggtggcgcctcatatggccacctagtgcttgaccagatgtgaattcagaaccacaaatggaacactcatgaacctt 40689909  T
Q  218 agacttgttgttattgttgcttccaccatgtagatttcccttaccattgttattcaattgaagggaaattgatttatgattgggtttgaattgaaactct 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  40689908 agacttgttgttattgttgcttccaccatgtagatttcccttaccattgttattcaattgaagagaaattgatttatgattgggtttgaattgaaactct 40689809  T
Q  318 tgatcatcatcatataagtgctttttctcttgagcaattgctaaagcttttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaaggga 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40689808 tgatcatcatcatataagtgctttttctcttgagcaattgctaaagcttttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaaggga 40689709  T
Q  418 atgttctgttgcatgttttgcattcataaacatagaaaccagctcttccagaatccaaagtagcagcttccatgaattttctactgctatattttgtgta 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40689708 atgttctgttgcatgttttgcattcataaacatagaaaccagctcttccagaatccaaagtagcagcttccatgaattttctactgctatattttgtgta 40689609  T
Q  518 gttcatcattccaccatctaaatcatcggtgttctttgttgatgattcctttgct 572  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  40689608 gttcatcattccaccatctaaatcatcagtgttctttgttgatgattcctttgct 40689554  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 151 - 227
Target Start/End: Complemental strand, 34710589 - 34710513
Alignment:
Q  151 tcatatggccacctagtgcttgaccagatgtgaattcagaaccacaaatggaacactcatgaaccttagacttgttg 227  Q
    ||||||||||||| ||||| || ||||||||||||| ||||||||||||||| ||| ||| |||||| || ||||||    
T  34710589 tcatatggccaccaagtgcctggccagatgtgaatttagaaccacaaatggagcacccataaaccttggatttgttg 34710513  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 34714111 - 34714059
Alignment:
Q  268 tattcaattgaagggaaattgatttatgattgggtttgaattgaaactcttga 320  Q
    ||||||||| ||||||||||||||||| ||||| |||||||||||||||||||    
T  34714111 tattcaatttaagggaaattgatttattattggttttgaattgaaactcttga 34714059  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 151 - 217
Target Start/End: Complemental strand, 34714285 - 34714219
Alignment:
Q  151 tcatatggccacctagtgcttgaccagatgtgaattcagaaccacaaatggaacactcatgaacctt 217  Q
    ||||||||||||| ||||| || ||||||||||||| ||||||||||||||| ||| ||| ||||||    
T  34714285 tcatatggccaccaagtgcctggccagatgtgaatttagaaccacaaatggagcacccataaacctt 34714219  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 386 - 450
Target Start/End: Complemental strand, 34710399 - 34710335
Alignment:
Q  386 tctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacat 450  Q
    ||||||||| ||||| |||||| |||||| ||||||| ||||||||||||||||| |||| ||||    
T  34710399 tctatggcctccaagtgcttgagatgaagtgaatgttttgttgcatgttttgcatgcatacacat 34710335  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 386 - 450
Target Start/End: Complemental strand, 34714023 - 34713959
Alignment:
Q  386 tctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacat 450  Q
    ||||||||| ||||| ||||||||||||| ||| ||| | ||||||||||||||| |||| ||||    
T  34714023 tctatggcctccaagtgcttgaaatgaagtgaaagtttttttgcatgttttgcatgcatacacat 34713959  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 378 - 418
Target Start/End: Original strand, 27509163 - 27509203
Alignment:
Q  378 tgacttgctctatggccaccaagggcttgaaatgaagggaa 418  Q
    |||||||||||||| |||||||| ||||| |||||||||||    
T  27509163 tgacttgctctatgtccaccaagtgcttggaatgaagggaa 27509203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 386 - 450
Target Start/End: Original strand, 34406576 - 34406640
Alignment:
Q  386 tctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacat 450  Q
    ||||||||| ||||| ||||||||||||| ||| | | |||| |||||||||||| |||| ||||    
T  34406576 tctatggcctccaagtgcttgaaatgaagtgaaagatttgttacatgttttgcatgcatacacat 34406640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 367 - 443
Target Start/End: Original strand, 7687870 - 7687946
Alignment:
Q  367 ttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattca 443  Q
    ||||||||||||||||||| ||||| ||||| ||||||||||||||||| |||  ||| || |||||||| ||||||    
T  7687870 ttggtttcttgtgacttgccctatgaccacctagggcttgaaatgaaggaaattgtctattacatgttttacattca 7687946  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 373 - 445
Target Start/End: Original strand, 40243778 - 40243850
Alignment:
Q  373 tcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcata 445  Q
    ||||||| || || ||||||||||||||||||||||| || | |||| || ||||||| ||||||||||||||    
T  40243778 tcttgtggctagccctatggccaccaagggcttgaaaagatgagaattttttgttgcacgttttgcattcata 40243850  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 365 - 439
Target Start/End: Complemental strand, 41234787 - 41234713
Alignment:
Q  365 ttttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgca 439  Q
    ||||||| ||||||||||||||||||||||||| |  |||||||| |||| ||||  | ||||||||||||||||    
T  41234787 ttttggtctcttgtgacttgctctatggccacctaaagcttgaaaagaagagaattctttgttgcatgttttgca 41234713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 366 - 418
Target Start/End: Complemental strand, 35506008 - 35505956
Alignment:
Q  366 tttggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaa 418  Q
    |||||||||||||||||||||||||| ||||| |  |||||||||||| ||||    
T  35506008 tttggtttcttgtgacttgctctatgtccacccaacgcttgaaatgaatggaa 35505956  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 149 - 218
Target Start/End: Complemental strand, 35506246 - 35506177
Alignment:
Q  149 cctcatatggccacctagtgcttgaccagatgtgaattcagaaccacaaatggaacactcatgaacctta 218  Q
    |||||| || ||||| | ||||||||| |||||||||||||  ||||| || |||||| |||||||||||    
T  35506246 cctcatgtgaccacccaatgcttgacctgatgtgaattcagctccacatattgaacacccatgaacctta 35506177  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 369 - 458
Target Start/End: Original strand, 20926000 - 20926089
Alignment:
Q  369 ggtttcttgtgacttgctctatggccaccaagggcttgaaatgaagggaatgttctgttgcatgttttgcattcataaacatagaaacca 458  Q
    ||||| ||||||||||| || || ||||| |  |||||||| ||||| || |||||||| ||||||||||||||||||| ||| ||||||    
T  20926000 ggttttttgtgacttgccctgtgaccacccaaagcttgaaaagaaggaaaagttctgttacatgttttgcattcataaatatacaaacca 20926089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 149 - 226
Target Start/End: Original strand, 20925729 - 20925806
Alignment:
Q  149 cctcatatggccacctagtgcttgaccagatgtgaattcagaaccacaaatggaacactcatgaaccttagacttgtt 226  Q
    |||||| || ||||| | |||||| || |||||||| || ||||||||||||||||||||||||| ||| | ||||||    
T  20925729 cctcatgtgtccacccaatgcttgtccggatgtgaactctgaaccacaaatggaacactcatgaatcttggccttgtt 20925806  T

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