View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20895_high_4 (Length: 423)
Name: NF20895_high_4
Description: NF20895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20895_high_4 |
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| [»] chr7 (11 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 386; Significance: 0; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 31201700 - 31202122
Alignment:
| Q |
1 |
tagttgcctctgcaggtaatgaaggaccaaccaatggaagtgttgtgaatgtagctccatgggtattcacaattgctgctagtacattagatagagactt |
100 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31201700 |
tagttgcctctgcaggtaatgaaggaccaaccggtggaagtgttgtgaatgtagctccatgggtattcacaattgctgctagtacattagatagagactt |
31201799 |
T |
|
| Q |
101 |
cagcagtaccataaccattggtaacaaaacaatcagggtatcattcttaatattctgattattannnnnnngacaaatttattgttattattgctgttga |
200 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
31201800 |
cagcagtaccataaccattggtaaccaaacaatcagggtatcattcttaatattctgattattatttttttgacaaatttattgttattattgctgttga |
31201899 |
T |
|
| Q |
201 |
ttcattattatactataacttttagcgacaattaacaagtgatggtatatgtcatcttgaatctcattattcctcttcttattgttgtaataatttttta |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31201900 |
ttcattattatactataacttttagcgacaattaacaagtgatggtatatgtcatcttgaatctcattattcctcttcttattgttgtaataatttttta |
31201999 |
T |
|
| Q |
301 |
ctcttattgctgtgttattattaagttataatacttaattttgaattctattattagggagccagtctttttgtaaacttgccacctaaccaggcatttc |
400 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31202000 |
ctcttattgttgtgttattattaagttataatacttaattttgaattctattattagggagccagtctttttgtaaacttgccacctaaccaggcatttc |
31202099 |
T |
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| Q |
401 |
ctctgattgtttctactgatggt |
423 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
31202100 |
ctctgattgtttctactgatggt |
31202122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 214
Target Start/End: Complemental strand, 31063468 - 31063256
Alignment:
| Q |
1 |
tagttgcctctgcaggtaatgaaggaccaaccaatggaagtgttgtgaatgtagctccatgggtattcacaattgctgctagtacattagatagagactt |
100 |
Q |
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||||||| ||||| || ||||||||||| ||| |||||||||||| ||||| ||||| |||||||||||| |||||||||||||| | || |||||||| |
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| T |
31063468 |
tagttgcatctgcgggaaatgaaggacctacccctggaagtgttgttaatgttgctccttgggtattcacagttgctgctagtacaattgacagagactt |
31063369 |
T |
|
| Q |
101 |
cagcagtaccataaccattggtaacaaaacaatcagggtatcattcttaatattctgattattannnnnnngacaaatttattgt--tattattgctgtt |
198 |
Q |
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|||||||||||||||||||||| || ||| ||| ||||| |||||||||||||||||| || |||| ||||||||| ||||||||||||| |
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| T |
31063368 |
cagcagtaccataaccattggtgaccaaataattagggt---attcttaatattctgatttttttctttttgacatatttattgtgatattattgctgtt |
31063272 |
T |
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| Q |
199 |
gattcattattatact |
214 |
Q |
| |
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||| ||||||||||| |
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| T |
31063271 |
aatttattattatact |
31063256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 31108555 - 31108405
Alignment:
| Q |
1 |
tagttgcctctgcaggtaatgaaggaccaaccaatggaagtgttgtgaatgtagctccatgggtattcacaattgctgctagtacattagatagagactt |
100 |
Q |
| |
|
||||||| ||||| || ||||||||||| ||| |||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||| |||||||| |
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| T |
31108555 |
tagttgcatctgcgggaaatgaaggacctacccctggaagtgttgttaatgttgctccatgggtgttcactgttgctgctagtacattagacagagactt |
31108456 |
T |
|
| Q |
101 |
cagcagtaccataaccattggtaacaaaacaatcagggtatcattcttaat |
151 |
Q |
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||||||| ||| |||||||||||||||||| ||| ||||| || |||||| |
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| T |
31108455 |
cagcagtgtcatgaccattggtaacaaaacactcacggtattatccttaat |
31108405 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 31051003 - 31050864
Alignment:
| Q |
1 |
tagttgcctctgcaggtaatgaaggaccaaccaatggaagtgttgtgaatgtagctccatgggtattcacaattgctgctagtacattagatagagactt |
100 |
Q |
| |
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||||||| ||||| || |||| ||||||||| |||||||||| ||||| ||||| ||||| ||||| |||||||||||||| | ||||||||||| |
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| T |
31051003 |
tagttgcatctgctggaaatggtggaccaacccctggaagtgttactaatgttgctccttgggtgttcactgttgctgctagtacaattgatagagactt |
31050904 |
T |
|
| Q |
101 |
cagcagtaccataaccattggtaacaaaacaatcagggta |
140 |
Q |
| |
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||||||||| ||||||||||||||||||||| ||| |||| |
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| T |
31050903 |
cagcagtactataaccattggtaacaaaacagtcacggta |
31050864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 31146305 - 31146156
Alignment:
| Q |
1 |
tagttgcctctgcaggtaatgaaggaccaaccaatggaagtgttgtgaatgtagctccatgggtattcacaattgctgctagtacattagatagagactt |
100 |
Q |
| |
|
||||||| || || || ||||||||||| ||| |||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||| |||||||| |
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| T |
31146305 |
tagttgcatcggctggaaatgaaggacctacccctggaagtgttactaatgttgctccatgggtgttcactgttgctgctagtacattagacagagactt |
31146206 |
T |
|
| Q |
101 |
cagcagtaccataaccattggtaacaaaacaatcagggtatcattcttaa |
150 |
Q |
| |
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||||||| ||| || ||| |||||||||| ||| |||||||| ||||| |
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| T |
31146205 |
cagcagtgtcatgactattaataacaaaacactcacggtatcatccttaa |
31146156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 31164131 - 31163982
Alignment:
| Q |
1 |
tagttgcctctgcaggtaatgaaggaccaaccaatggaagtgttgtgaatgtagctccatgggtattcacaattgctgctagtacattagatagagactt |
100 |
Q |
| |
|
||||||| || || || ||||||||||| ||| |||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||| |||||||| |
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| T |
31164131 |
tagttgcatcggctggaaatgaaggacctacccctggaagtgttactaatgttgctccatgggtgttcactgttgctgctagtacattagacagagactt |
31164032 |
T |
|
| Q |
101 |
cagcagtaccataaccattggtaacaaaacaatcagggtatcattcttaa |
150 |
Q |
| |
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||||||| ||| |||||| ||||| |||| ||| |||||||| ||||| |
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| T |
31164031 |
cagcagtgtcatgaccattaataacagaacactcacggtatcatccttaa |
31163982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 356 - 394
Target Start/End: Complemental strand, 31108289 - 31108251
Alignment:
| Q |
356 |
agggagccagtctttttgtaaacttgccacctaaccagg |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
31108289 |
agggagccagtctttttgtaaacttgccacctaaccagg |
31108251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 355 - 392
Target Start/End: Complemental strand, 31146032 - 31145995
Alignment:
| Q |
355 |
tagggagccagtctttttgtaaacttgccacctaacca |
392 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
31146032 |
tagggagccagtctttttgtaaacttgccacctaacca |
31145995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 355 - 392
Target Start/End: Complemental strand, 31163856 - 31163819
Alignment:
| Q |
355 |
tagggagccagtctttttgtaaacttgccacctaacca |
392 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
31163856 |
tagggagccagtctttttgtaaacttgccacctaacca |
31163819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 352 - 393
Target Start/End: Complemental strand, 31063225 - 31063184
Alignment:
| Q |
352 |
tattagggagccagtctttttgtaaacttgccacctaaccag |
393 |
Q |
| |
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|||||||||||||||||||||||| |||| |||||||||||| |
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| T |
31063225 |
tattagggagccagtctttttgtagacttaccacctaaccag |
31063184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 349 - 393
Target Start/End: Complemental strand, 31050769 - 31050725
Alignment:
| Q |
349 |
tattattagggagccagtctttttgtaaacttgccacctaaccag |
393 |
Q |
| |
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||||| ||||||||||| |||||||||||||| |||||||||||| |
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| T |
31050769 |
tattactagggagccagcctttttgtaaacttaccacctaaccag |
31050725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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