View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20895_low_12 (Length: 279)

Name: NF20895_low_12
Description: NF20895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20895_low_12
NF20895_low_12
[»] chr4 (22 HSPs)
chr4 (44-253)||(2625806-2626014)
chr4 (195-250)||(18513172-18513227)
chr4 (198-279)||(42640558-42640643)
chr4 (196-279)||(11596295-11596382)
chr4 (198-247)||(23292926-23292975)
chr4 (199-247)||(3947702-3947750)
chr4 (198-234)||(18844423-18844459)
chr4 (198-242)||(37203327-37203371)
chr4 (8-51)||(2380687-2380730)
chr4 (194-233)||(3064864-3064903)
chr4 (196-247)||(22234817-22234868)
chr4 (200-247)||(22440559-22440606)
chr4 (195-242)||(53381527-53381574)
chr4 (198-227)||(3144587-3144616)
chr4 (197-234)||(5775303-5775340)
chr4 (196-241)||(24613628-24613673)
chr4 (194-227)||(35161126-35161159)
chr4 (198-234)||(715545-715581)
chr4 (198-234)||(752871-752907)
chr4 (198-242)||(8423658-8423702)
chr4 (198-234)||(28470448-28470484)
chr4 (197-241)||(40784029-40784073)
[»] chr6 (14 HSPs)
chr6 (199-273)||(31959194-31959268)
chr6 (201-279)||(9025448-9025524)
chr6 (196-247)||(28715365-28715416)
chr6 (196-236)||(4878023-4878063)
chr6 (207-279)||(21395262-21395338)
chr6 (196-234)||(17327588-17327626)
chr6 (198-227)||(6389822-6389851)
chr6 (197-234)||(8805523-8805560)
chr6 (198-247)||(28152168-28152217)
chr6 (198-242)||(7378054-7378098)
chr6 (195-247)||(8365445-8365497)
chr6 (195-227)||(8776905-8776937)
chr6 (198-250)||(9107299-9107351)
chr6 (198-234)||(32839571-32839607)
[»] chr1 (24 HSPs)
chr1 (198-279)||(2218268-2218347)
chr1 (200-250)||(16297223-16297273)
chr1 (195-241)||(22947806-22947852)
chr1 (200-250)||(42359391-42359441)
chr1 (199-260)||(10233313-10233374)
chr1 (195-279)||(22881564-22881646)
chr1 (197-241)||(7918153-7918197)
chr1 (198-234)||(18556385-18556421)
chr1 (196-247)||(9828125-9828176)
chr1 (200-247)||(17778623-17778670)
chr1 (199-242)||(40258874-40258917)
chr1 (196-247)||(40917830-40917881)
chr1 (198-279)||(113328-113412)
chr1 (198-248)||(9630561-9630611)
chr1 (196-242)||(21365990-21366036)
chr1 (197-226)||(13436534-13436563)
chr1 (189-234)||(15765841-15765886)
chr1 (197-234)||(37598914-37598951)
chr1 (203-247)||(1209823-1209867)
chr1 (198-242)||(22515827-22515871)
chr1 (198-234)||(32461393-32461429)
chr1 (198-234)||(35702542-35702578)
chr1 (198-246)||(38078601-38078649)
chr1 (198-234)||(47989591-47989627)
[»] chr7 (17 HSPs)
chr7 (198-242)||(21880227-21880271)
chr7 (198-247)||(598278-598327)
chr7 (195-247)||(5409768-5409820)
chr7 (198-248)||(1433528-1433578)
chr7 (198-247)||(29763129-29763178)
chr7 (196-241)||(35862027-35862072)
chr7 (195-247)||(9778575-9778627)
chr7 (198-234)||(29812598-29812634)
chr7 (198-247)||(6490786-6490835)
chr7 (205-273)||(18215144-18215210)
chr7 (198-247)||(30813867-30813916)
chr7 (198-247)||(43027404-43027453)
chr7 (198-242)||(24339728-24339772)
chr7 (199-247)||(32287404-32287452)
chr7 (197-273)||(35749931-35750007)
chr7 (202-242)||(40287306-40287346)
chr7 (203-247)||(43250074-43250118)
[»] scaffold0003 (1 HSPs)
scaffold0003 (198-247)||(241675-241724)
[»] chr8 (13 HSPs)
chr8 (197-279)||(8343001-8343087)
chr8 (198-242)||(15816058-15816102)
chr8 (196-241)||(27213601-27213646)
chr8 (198-247)||(36450694-36450743)
chr8 (195-247)||(29510230-29510282)
chr8 (198-234)||(39820511-39820547)
chr8 (200-247)||(44067597-44067644)
chr8 (198-248)||(22652056-22652106)
chr8 (199-241)||(29447040-29447082)
chr8 (198-270)||(13436910-13436985)
chr8 (198-242)||(17751731-17751775)
chr8 (198-242)||(17760718-17760762)
chr8 (198-226)||(24413499-24413527)
[»] chr3 (20 HSPs)
chr3 (199-276)||(25211571-25211648)
chr3 (196-247)||(41961577-41961628)
chr3 (199-249)||(1389906-1389956)
chr3 (198-248)||(34185052-34185102)
chr3 (196-242)||(49651714-49651760)
chr3 (198-247)||(27505321-27505370)
chr3 (200-279)||(25775538-25775624)
chr3 (195-247)||(40052382-40052434)
chr3 (198-241)||(20503541-20503584)
chr3 (200-247)||(24204983-24205030)
chr3 (197-228)||(27903727-27903758)
chr3 (198-279)||(4990912-4990997)
chr3 (195-241)||(14979225-14979271)
chr3 (196-242)||(40993273-40993319)
chr3 (198-227)||(17276817-17276846)
chr3 (246-279)||(27505275-27505308)
chr3 (198-247)||(55401145-55401194)
chr3 (195-227)||(14209214-14209246)
chr3 (199-227)||(14216993-14217021)
chr3 (199-227)||(14223122-14223150)
[»] chr5 (14 HSPs)
chr5 (196-248)||(43564950-43565002)
chr5 (196-227)||(7218216-7218247)
chr5 (197-240)||(14873599-14873642)
chr5 (198-247)||(2436981-2437030)
chr5 (197-234)||(10298633-10298670)
chr5 (195-227)||(6247700-6247732)
chr5 (197-241)||(6326252-6326296)
chr5 (198-234)||(17123130-17123166)
chr5 (198-242)||(19820328-19820372)
chr5 (198-234)||(21576685-21576721)
chr5 (198-234)||(22423764-22423800)
chr5 (198-234)||(35017126-35017162)
chr5 (198-242)||(39698627-39698671)
chr5 (200-240)||(43001882-43001922)
[»] chr2 (10 HSPs)
chr2 (195-247)||(37419824-37419876)
chr2 (203-273)||(23058389-23058466)
chr2 (198-241)||(10535685-10535728)
chr2 (200-242)||(2438661-2438703)
chr2 (196-246)||(37497192-37497242)
chr2 (198-247)||(18420363-18420412)
chr2 (198-247)||(26769592-26769641)
chr2 (198-247)||(38117099-38117148)
chr2 (198-242)||(18840953-18840997)
chr2 (194-226)||(21616836-21616868)
[»] scaffold0007 (1 HSPs)
scaffold0007 (200-247)||(225199-225246)
[»] scaffold0009 (1 HSPs)
scaffold0009 (205-273)||(188446-188512)
[»] scaffold0168 (2 HSPs)
scaffold0168 (195-233)||(21114-21152)
scaffold0168 (195-233)||(21372-21410)
[»] scaffold0004 (1 HSPs)
scaffold0004 (199-241)||(92898-92940)
[»] scaffold0475 (1 HSPs)
scaffold0475 (197-234)||(3391-3428)
[»] scaffold0086 (1 HSPs)
scaffold0086 (198-247)||(3009-3058)
[»] scaffold0793 (1 HSPs)
scaffold0793 (198-234)||(4821-4857)
[»] scaffold0652 (1 HSPs)
scaffold0652 (199-247)||(403-451)
[»] scaffold0019 (1 HSPs)
scaffold0019 (195-247)||(71806-71858)


Alignment Details
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 22)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 44 - 253
Target Start/End: Original strand, 2625806 - 2626014
Alignment:
Q  44 tgatagttacttaaaattgtaaacgtgtcaattattgcagtattttaatttcgagtttgtttttgtctattcacaaattttggtggttcacttgtttaaa 143  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  2625806 tgatagttacttaaaattgtaaacgtgtcaattattgcagtattttaatttcgagtttgtttttgtctatttacaaattttggtggttcacttgtttaaa 2625905  T
Q  144 cacttagcatattgcattgttatggacataagaatgagattttgggtttcaaacctatgaagcacggacacttctcggattaggcttgtcctggtgtcga 243  Q
    ||||||||||| || |||||||||||||||||||||||| |||||| ||| ||||||||||||||||| ||| || | ||||||| ||||||| |||||     
T  2625906 cacttagcataatgtattgttatggacataagaatgagaatttgggcttc-aacctatgaagcacggatactccttgaattaggcgtgtcctgatgtcgg 2626004  T
Q  244 acacacggca 253  Q
    |||| |||||    
T  2626005 acacgcggca 2626014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 250
Target Start/End: Original strand, 18513172 - 18513227
Alignment:
Q  195 aacctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacacacg 250  Q
    ||||||||||||||||||||| ||| |||||||| ||||||||||||| |||||||    
T  18513172 aacctatgaagcacggacactcctcagattaggcgtgtcctggtgtcggacacacg 18513227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 279
Target Start/End: Complemental strand, 42640643 - 42640558
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac----acggcaccgacacttgtaattacacttaatta 279  Q
    |||||||||||||| ||| |||||||||||| |||||||||| || ||||     || |||||||||||||||||||||| |||||    
T  42640643 ctatgaagcacggaaactcctcggattaggcgtgtcctggtgccggacacgtgtccgacaccgacacttgtaattacactgaatta 42640558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 279
Target Start/End: Original strand, 11596295 - 11596382
Alignment:
Q  196 acctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaac----acacggcaccgacacttgtaattacacttaatta 279  Q
    |||||||||||||||||||| ||| |||||||| ||||| | ||||| ||    ||||| |||| ||||||||||||||||| |||||    
T  11596295 acctatgaagcacggacactcctcagattaggcgtgtcccgatgtcggacaatgacacgacacctacacttgtaattacactgaatta 11596382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 23292926 - 23292975
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    |||||||||||||||||| |||||||||||| ||||| ||||||| ||||    
T  23292926 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacac 23292975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 3947702 - 3947750
Alignment:
Q  199 tatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    ||||||||||||||||| |||||||||||  ||||||||||||| ||||    
T  3947702 tatgaagcacggacactcctcggattaggtgtgtcctggtgtcggacac 3947750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 18844423 - 18844459
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcc 234  Q
    ||||||||||||||||||||||||||||||| |||||    
T  18844423 ctatgaagcacggacacttctcggattaggcgtgtcc 18844459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 37203371 - 37203327
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcg 242  Q
    ||||||||||||||||||||||||||||| | ||||| |||||||    
T  37203371 ctatgaagcacggacacttctcggattagacgtgtcccggtgtcg 37203327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 2380687 - 2380730
Alignment:
Q  8 gagaagaataacttagatgataatgatactccatagtgatagtt 51  Q
    ||||||||||||||||||| |||||||||| |||||| ||||||    
T  2380687 gagaagaataacttagatggtaatgatactgcatagtcatagtt 2380730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 233
Target Start/End: Original strand, 3064864 - 3064903
Alignment:
Q  194 aaacctatgaagcacggacacttctcggattaggcttgtc 233  Q
    |||||||||||||||||||||| |||||||||||| ||||    
T  3064864 aaacctatgaagcacggacactcctcggattaggcgtgtc 3064903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 247
Target Start/End: Original strand, 22234817 - 22234868
Alignment:
Q  196 acctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    |||||||||||||| ||||||||||||||||   ||||||||||||| ||||    
T  22234817 acctatgaagcacgaacacttctcggattagctgtgtcctggtgtcggacac 22234868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 247
Target Start/End: Original strand, 22440559 - 22440606
Alignment:
Q  200 atgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    |||||||||||||||| |||||||||||| |||||| |||||| ||||    
T  22440559 atgaagcacggacactcctcggattaggcgtgtcctagtgtcggacac 22440606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 53381527 - 53381574
Alignment:
Q  195 aacctatgaagcacggacacttctcggattaggcttgtcctggtgtcg 242  Q
    ||||||||||||||||||||| |||||||||||  ||||| |||||||    
T  53381527 aacctatgaagcacggacactcctcggattaggtgtgtcccggtgtcg 53381574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 227
Target Start/End: Original strand, 3144587 - 3144616
Alignment:
Q  198 ctatgaagcacggacacttctcggattagg 227  Q
    ||||||||||||||||||||||||||||||    
T  3144587 ctatgaagcacggacacttctcggattagg 3144616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 5775303 - 5775340
Alignment:
Q  197 cctatgaagcacggacacttctcggattaggcttgtcc 234  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  5775303 cctatgaagcacggacactcctcggattaggcgtgtcc 5775340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 196 - 241
Target Start/End: Original strand, 24613628 - 24613673
Alignment:
Q  196 acctatgaagcacggacacttctcggattaggcttgtcctggtgtc 241  Q
    |||||||||||||||||||| || ||||||| | ||||||||||||    
T  24613628 acctatgaagcacggacactcctaggattagacgtgtcctggtgtc 24613673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 227
Target Start/End: Complemental strand, 35161159 - 35161126
Alignment:
Q  194 aaacctatgaagcacggacacttctcggattagg 227  Q
    ||||||||||||||||||||||| ||||||||||    
T  35161159 aaacctatgaagcacggacacttttcggattagg 35161126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 715545 - 715581
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcc 234  Q
    |||||||||||||||||| |||||||||||| |||||    
T  715545 ctatgaagcacggacactcctcggattaggcgtgtcc 715581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 752871 - 752907
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcc 234  Q
    |||||||||||||||||| |||||||||||| |||||    
T  752871 ctatgaagcacggacactcctcggattaggcgtgtcc 752907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 8423658 - 8423702
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcg 242  Q
    |||||| ||||||||||||||| |||||||| ||||| |||||||    
T  8423658 ctatgacgcacggacacttctccgattaggcgtgtcccggtgtcg 8423702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 28470484 - 28470448
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcc 234  Q
    |||||||||||||||||| |||||||||||| |||||    
T  28470484 ctatgaagcacggacactcctcggattaggcatgtcc 28470448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 241
Target Start/End: Complemental strand, 40784073 - 40784029
Alignment:
Q  197 cctatgaagcacggacacttctcggattaggcttgtcctggtgtc 241  Q
    ||||||||||||||||||| |||||||||||  ||||| ||||||    
T  40784073 cctatgaagcacggacactcctcggattaggtgtgtcccggtgtc 40784029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 199 - 273
Target Start/End: Complemental strand, 31959268 - 31959194
Alignment:
Q  199 tatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacacacggcaccgacacttgtaattacact 273  Q
    ||||||||||||||||| |||||||||||  ||||| ||||||| ||||| | | ||||||||||||||||||||    
T  31959268 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacacatgtcgccgacacttgtaattacact 31959194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 201 - 279
Target Start/End: Original strand, 9025448 - 9025524
Alignment:
Q  201 tgaagcacggacacttctcggattaggcttgtcctggtgtcgaacacacggcaccgacacttgtaattacacttaatta 279  Q
    |||||||||||||||||||||||||||| ||||| |||||||   ||||| ||||||||| | |||||||||| |||||    
T  9025448 tgaagcacggacacttctcggattaggcgtgtcccggtgtcg--gacacgacaccgacacatataattacactgaatta 9025524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 28715416 - 28715365
Alignment:
Q  196 acctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    |||||||||||||| |||||||||| ||||||| ||||| ||||||||||||    
T  28715416 acctatgaagcacgtacacttctcgaattaggcgtgtcccggtgtcgaacac 28715365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 196 - 236
Target Start/End: Complemental strand, 4878063 - 4878023
Alignment:
Q  196 acctatgaagcacggacacttctcggattaggcttgtcctg 236  Q
    |||||||||||||||||||| |||||||||||| |||||||    
T  4878063 acctatgaagcacggacactcctcggattaggcgtgtcctg 4878023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 207 - 279
Target Start/End: Original strand, 21395262 - 21395338
Alignment:
Q  207 acggacacttctcggattaggcttgtcctggtgtcgaac----acacggcaccgacacttgtaattacacttaatta 279  Q
    ||||||||| || ||||||||| ||||||||||||  ||    ||||| |||||||||||||||||||||| |||||    
T  21395262 acggacactccttggattaggcgtgtcctggtgtccgacactgacacgacaccgacacttgtaattacactaaatta 21395338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 234
Target Start/End: Original strand, 17327588 - 17327626
Alignment:
Q  196 acctatgaagcacggacacttctcggattaggcttgtcc 234  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  17327588 acctatgaagcacggacactcctcggattaggcgtgtcc 17327626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 227
Target Start/End: Complemental strand, 6389851 - 6389822
Alignment:
Q  198 ctatgaagcacggacacttctcggattagg 227  Q
    ||||||||||||||||||||||||||||||    
T  6389851 ctatgaagcacggacacttctcggattagg 6389822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 8805523 - 8805560
Alignment:
Q  197 cctatgaagcacggacacttctcggattaggcttgtcc 234  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  8805523 cctatgaagcacggacactcctcggattaggcatgtcc 8805560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 28152217 - 28152168
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    |||||||||||| ||||| |||||||||||| ||||| ||||||| ||||    
T  28152217 ctatgaagcacgaacactcctcggattaggcctgtcccggtgtcggacac 28152168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 7378098 - 7378054
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcg 242  Q
    |||||||||||||||||||||| |||||| | ||||| |||||||    
T  7378098 ctatgaagcacggacacttctcagattagccgtgtcccggtgtcg 7378054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 8365445 - 8365497
Alignment:
Q  195 aacctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    ||||||||||||||||| ||| |||||||||||| |||||  |||||| ||||    
T  8365445 aacctatgaagcacggagactcctcggattaggcgtgtcccagtgtcggacac 8365497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 8776905 - 8776937
Alignment:
Q  195 aacctatgaagcacggacacttctcggattagg 227  Q
    ||||||||||||||||||||| |||||||||||    
T  8776905 aacctatgaagcacggacactcctcggattagg 8776937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 250
Target Start/End: Original strand, 9107299 - 9107351
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacacacg 250  Q
    ||||||||||||| |||| |||||||||||  ||||| ||||||| |||||||    
T  9107299 ctatgaagcacgggcactcctcggattaggtgtgtcccggtgtcggacacacg 9107351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 32839571 - 32839607
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcc 234  Q
    ||||||||||| ||||||||||||||||||| |||||    
T  32839571 ctatgaagcacagacacttctcggattaggcgtgtcc 32839607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 198 - 279
Target Start/End: Complemental strand, 2218347 - 2218268
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacacacggcaccgacacttgtaattacacttaatta 279  Q
    |||||||||||||||||| ||| |||||||| |||||| ||||||   ||||| |||||||||||||||||||||| |||||    
T  2218347 ctatgaagcacggacactcctcagattaggcgtgtcctagtgtcg--gacacgacaccgacacttgtaattacactaaatta 2218268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 200 - 250
Target Start/End: Original strand, 16297223 - 16297273
Alignment:
Q  200 atgaagcacggacacttctcggattaggcttgtcctggtgtcgaacacacg 250  Q
    |||||||||||||||| |||||||||||| ||||||||||||| |||||||    
T  16297223 atgaagcacggacactcctcggattaggcgtgtcctggtgtcggacacacg 16297273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 195 - 241
Target Start/End: Complemental strand, 22947852 - 22947806
Alignment:
Q  195 aacctatgaagcacggacacttctcggattaggcttgtcctggtgtc 241  Q
    ||||||||||||||||||||| |||||||||||| ||||| ||||||    
T  22947852 aacctatgaagcacggacactcctcggattaggcgtgtccaggtgtc 22947806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 200 - 250
Target Start/End: Original strand, 42359391 - 42359441
Alignment:
Q  200 atgaagcacggacacttctcggattaggcttgtcctggtgtcgaacacacg 250  Q
    |||||||||||||||| |||||||||||| ||||| ||||||| |||||||    
T  42359391 atgaagcacggacactcctcggattaggcgtgtcccggtgtcggacacacg 42359441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 260
Target Start/End: Complemental strand, 10233374 - 10233313
Alignment:
Q  199 tatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacacacggcaccgacac 260  Q
    ||||||||||||||||| ||| |||||||  ||||||||||||| ||||| | |||||||||    
T  10233374 tatgaagcacggacactcctctgattaggtgtgtcctggtgtcggacacatgacaccgacac 10233313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 279
Target Start/End: Original strand, 22881564 - 22881646
Alignment:
Q  195 aacctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacacacggcaccgacacttgtaattacacttaatta 279  Q
    ||||||||||||||||||||| |||||||||| | ||||| |||||||      || |||||||||||||||||||||| |||||    
T  22881564 aacctatgaagcacggacactcctcggattagacgtgtcccggtgtcg--tgtccgacaccgacacttgtaattacactaaatta 22881646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 7918153 - 7918197
Alignment:
Q  197 cctatgaagcacggacacttctcggattaggcttgtcctggtgtc 241  Q
    ||||||||||||||||||| |||||||||||  ||||||||||||    
T  7918153 cctatgaagcacggacactcctcggattaggtgtgtcctggtgtc 7918197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 18556385 - 18556421
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcc 234  Q
    ||||||||||||||||||||||||||||||| |||||    
T  18556385 ctatgaagcacggacacttctcggattaggcgtgtcc 18556421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 9828176 - 9828125
Alignment:
Q  196 acctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    |||||||||||||||||||| |||||||||| | ||||| ||||||| ||||    
T  9828176 acctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacac 9828125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 247
Target Start/End: Complemental strand, 17778670 - 17778623
Alignment:
Q  200 atgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    |||||||||| |||||||||||||||||| ||||| ||||||| ||||    
T  17778670 atgaagcacgaacacttctcggattaggcatgtcccggtgtcggacac 17778623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 199 - 242
Target Start/End: Original strand, 40258874 - 40258917
Alignment:
Q  199 tatgaagcacggacacttctcggattaggcttgtcctggtgtcg 242  Q
    ||||||||| ||||||| |||||||||||| |||||||||||||    
T  40258874 tatgaagcatggacactcctcggattaggcgtgtcctggtgtcg 40258917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 247
Target Start/End: Complemental strand, 40917881 - 40917830
Alignment:
Q  196 acctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    |||||||||||||||||| | |||||||||||| ||||| ||||||| ||||    
T  40917881 acctatgaagcacggacagtcctcggattaggcgtgtcccggtgtcggacac 40917830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 279
Target Start/End: Complemental strand, 113412 - 113328
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaac---acacggcaccgacacttgtaattacacttaatta 279  Q
    |||||||||| || |||| |||||||||||| ||||| ||||| | ||   ||||| |||| ||||||||||||||||| |||||    
T  113412 ctatgaagcatgggcactcctcggattaggcgtgtcccggtgttggacacgacacgacacctacacttgtaattacactgaatta 113328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 248
Target Start/End: Original strand, 9630561 - 9630611
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacaca 248  Q
    |||||||||||| ||||| |||||||||||| |||||| |||| |||||||    
T  9630561 ctatgaagcacgaacactcctcggattaggcgtgtcctcgtgttgaacaca 9630611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 21365990 - 21366036
Alignment:
Q  196 acctatgaagcacggacacttctcggattaggcttgtcctggtgtcg 242  Q
    |||||||||||||||||||| |||||||||||| ||||  |||||||    
T  21365990 acctatgaagcacggacactcctcggattaggcgtgtctcggtgtcg 21366036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 226
Target Start/End: Complemental strand, 13436563 - 13436534
Alignment:
Q  197 cctatgaagcacggacacttctcggattag 226  Q
    ||||||||||||||||||||||||||||||    
T  13436563 cctatgaagcacggacacttctcggattag 13436534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 234
Target Start/End: Complemental strand, 15765886 - 15765841
Alignment:
Q  189 gtttcaaacctatgaagcacggacacttctcggattaggcttgtcc 234  Q
    ||||| |||||||||||||||||||||  ||||||||||| |||||    
T  15765886 gtttctaacctatgaagcacggacactcttcggattaggcgtgtcc 15765841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 37598951 - 37598914
Alignment:
Q  197 cctatgaagcacggacacttctcggattaggcttgtcc 234  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  37598951 cctatgaagcacggacactcctcggattaggcgtgtcc 37598914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 1209867 - 1209823
Alignment:
Q  203 aagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    ||||||| |||||||||||||||||  ||||||||||||| ||||    
T  1209867 aagcacgaacacttctcggattaggtgtgtcctggtgtcggacac 1209823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 22515827 - 22515871
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcg 242  Q
    |||||||||||||||||| |||||||||||| ||||  |||||||    
T  22515827 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcg 22515871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 32461393 - 32461429
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcc 234  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  32461393 ctatgaagcacggacacttcttggattaggcgtgtcc 32461429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 35702542 - 35702578
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcc 234  Q
    |||||||||||||||||| |||||||||||| |||||    
T  35702542 ctatgaagcacggacactcctcggattaggcgtgtcc 35702578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 38078601 - 38078649
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaaca 246  Q
    |||||||||||| | ||| |||||||||||| ||||||||||| |||||    
T  38078601 ctatgaagcacgaatactcctcggattaggcgtgtcctggtgttgaaca 38078649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 47989627 - 47989591
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcc 234  Q
    |||||||||||||||||| |||||||||||| |||||    
T  47989627 ctatgaagcacggacactcctcggattaggcgtgtcc 47989591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 21880271 - 21880227
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcg 242  Q
    ||||||||||||||||||||||||||||||| |||||||||||||    
T  21880271 ctatgaagcacggacacttctcggattaggcgtgtcctggtgtcg 21880227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 598327 - 598278
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||| ||||    
T  598327 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacac 598278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 5409768 - 5409820
Alignment:
Q  195 aacctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    ||||||||||||||||||||| |||||||||||| ||||| ||||||| ||||    
T  5409768 aacctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacac 5409820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 1433578 - 1433528
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacaca 248  Q
    |||||||||||||||||| |||||||||| | ||||||||||||| |||||    
T  1433578 ctatgaagcacggacactcctcggattagacgtgtcctggtgtcggacaca 1433528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 29763129 - 29763178
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    |||||||||||||||||| |||||||||||| ||||||| ||||| ||||    
T  29763129 ctatgaagcacggacactcctcggattaggcgtgtcctgatgtcggacac 29763178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 35862072 - 35862027
Alignment:
Q  196 acctatgaagcacggacacttctcggattaggcttgtcctggtgtc 241  Q
    |||||||||||||||||||| |||||||||||| |||||| |||||    
T  35862072 acctatgaagcacggacactcctcggattaggcgtgtcctcgtgtc 35862027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 9778627 - 9778575
Alignment:
Q  195 aacctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    ||||||||||||||||||||| || ||||||||| ||||| ||||||| ||||    
T  9778627 aacctatgaagcacggacactccttggattaggcgtgtcccggtgtcggacac 9778575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 29812598 - 29812634
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcc 234  Q
    ||||||||||||||||||||||||||||||| |||||    
T  29812598 ctatgaagcacggacacttctcggattaggcgtgtcc 29812634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 6490835 - 6490786
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    |||||||||||||||||| ||||||||| || ||||| ||||||| ||||    
T  6490835 ctatgaagcacggacactcctcggattaagcgtgtcccggtgtcggacac 6490786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 273
Target Start/End: Original strand, 18215144 - 18215210
Alignment:
Q  205 gcacggacacttctcggattaggcttgtcctggtgtcgaacacacggcaccgacacttgtaattacact 273  Q
    ||||||||||| ||| |||||||| ||||| |||||||   ||||| ||||||||||||||| ||||||    
T  18215144 gcacggacactcctcagattaggcgtgtcccggtgtcg--gacacgacaccgacacttgtaactacact 18215210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 30813916 - 30813867
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    |||||||||||||||||| |||||||||||| ||| ||| ||||| ||||    
T  30813916 ctatgaagcacggacactcctcggattaggcgtgttctgatgtcggacac 30813867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 43027404 - 43027453
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    ||||||||||||||||||  ||||||||||| ||||| ||||||| ||||    
T  43027404 ctatgaagcacggacactcatcggattaggcgtgtcccggtgtcggacac 43027453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 24339772 - 24339728
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcg 242  Q
    ||||||||||||| |||| |||||||||||| ||||| |||||||    
T  24339772 ctatgaagcacgggcactcctcggattaggcgtgtcccggtgtcg 24339728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 32287404 - 32287452
Alignment:
Q  199 tatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    ||||||||||||||||| |||||||||||  ||||| ||||||| ||||    
T  32287404 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacac 32287452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 273
Target Start/End: Complemental strand, 35750007 - 35749931
Alignment:
Q  197 cctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacacacggcaccgacacttgtaattacact 273  Q
    |||||||||||| |||||| ||| || ||||  ||||| ||| ||| ||||||| |||||||||||  |||||||||    
T  35750007 cctatgaagcacagacactcctccgactaggtgtgtcccggtttcggacacacgacaccgacacttacaattacact 35749931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 242
Target Start/End: Original strand, 40287306 - 40287346
Alignment:
Q  202 gaagcacggacacttctcggattaggcttgtcctggtgtcg 242  Q
    |||||||||||||| |||||||||||| ||||| |||||||    
T  40287306 gaagcacggacactcctcggattaggcatgtcccggtgtcg 40287346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 247
Target Start/End: Complemental strand, 43250118 - 43250074
Alignment:
Q  203 aagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    ||||||||||||| |||| ||||||| ||||||||||||| ||||    
T  43250118 aagcacggacactcctcgaattaggcgtgtcctggtgtcggacac 43250074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 241724 - 241675
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    ||||||||||||||||||||||||||||||| ||||| ||||||| ||||    
T  241724 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcggacac 241675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 279
Target Start/End: Complemental strand, 8343087 - 8343001
Alignment:
Q  197 cctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac----acggcaccgacacttgtaattacacttaatta 279  Q
    |||||||||||| ||||||  ||||||||||| ||||| ||||||| ||||    ||| |||||||||||||||||||||| |||||    
T  8343087 cctatgaagcacagacactcttcggattaggcgtgtcccggtgtcggacacatgtacgacaccgacacttgtaattacactaaatta 8343001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 15816058 - 15816102
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcg 242  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||    
T  15816058 ctatgaagcacggacacttctcggattaggcgtgtcccggtgtcg 15816102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 196 - 241
Target Start/End: Complemental strand, 27213646 - 27213601
Alignment:
Q  196 acctatgaagcacggacacttctcggattaggcttgtcctggtgtc 241  Q
    ||||||||||||||||||||||||||||||| | ||||| ||||||    
T  27213646 acctatgaagcacggacacttctcggattagccgtgtcccggtgtc 27213601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 36450694 - 36450743
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    ||||||||||| |||||| |||||||||||| ||||||||||||| ||||    
T  36450694 ctatgaagcacagacactcctcggattaggcgtgtcctggtgtcggacac 36450743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 247
Target Start/End: Original strand, 29510230 - 29510282
Alignment:
Q  195 aacctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    ||||||||||||||||||||| |||||||||||  ||||| ||||||| ||||    
T  29510230 aacctatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacac 29510282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 39820547 - 39820511
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcc 234  Q
    ||||||||||||||||||||||||||||||| |||||    
T  39820547 ctatgaagcacggacacttctcggattaggcgtgtcc 39820511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 247
Target Start/End: Complemental strand, 44067644 - 44067597
Alignment:
Q  200 atgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    |||||||||||||||| |||| ||||||| ||||||||||||| ||||    
T  44067644 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcggacac 44067597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 22652106 - 22652056
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacaca 248  Q
    |||||||||||||||||| |||||||||| | ||||| ||||||| |||||    
T  22652106 ctatgaagcacggacactcctcggattagacgtgtcccggtgtcggacaca 22652056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 241
Target Start/End: Original strand, 29447040 - 29447082
Alignment:
Q  199 tatgaagcacggacacttctcggattaggcttgtcctggtgtc 241  Q
    ||||||||||||||||| || ||||||||| ||||||||||||    
T  29447040 tatgaagcacggacactcctaggattaggcgtgtcctggtgtc 29447082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 270
Target Start/End: Original strand, 13436910 - 13436985
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcga-ac--acacggcaccgacacttgtaattac 270  Q
    ||||||||||| |||||| || ||||||||| ||||| |||||||| ||  ||||| ||||||||||||| |||||    
T  13436910 ctatgaagcacagacactccttggattaggcgtgtcccggtgtcgacaccgacacgacaccgacacttgttattac 13436985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 17751775 - 17751731
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcg 242  Q
    ||||||||| |||||||| |||||||||||| ||||| |||||||    
T  17751775 ctatgaagcgcggacactcctcggattaggcgtgtcccggtgtcg 17751731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 17760762 - 17760718
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcg 242  Q
    ||||||||| |||||||| |||||||||||| ||||| |||||||    
T  17760762 ctatgaagcgcggacactcctcggattaggcgtgtcccggtgtcg 17760718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 226
Target Start/End: Original strand, 24413499 - 24413527
Alignment:
Q  198 ctatgaagcacggacacttctcggattag 226  Q
    |||||||||||||||||||||||||||||    
T  24413499 ctatgaagcacggacacttctcggattag 24413527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 276
Target Start/End: Complemental strand, 25211648 - 25211571
Alignment:
Q  199 tatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacacacggcaccgacacttgtaattacacttaa 276  Q
    ||||||||||  ||||||||| |||||||| |||||||||||||   ||||| ||||||||| | |||||||||||||    
T  25211648 tatgaagcacaaacacttctcagattaggcgtgtcctggtgtcggggacacgacaccgacacatataattacacttaa 25211571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 196 - 247
Target Start/End: Original strand, 41961577 - 41961628
Alignment:
Q  196 acctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    ||||||||||||||||||||||||||||||||| |||||  |||||| ||||    
T  41961577 acctatgaagcacggacacttctcggattaggcgtgtcccagtgtcggacac 41961628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 1389956 - 1389906
Alignment:
Q  199 tatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacacac 249  Q
    ||||||||||||||||| || ||||||||| ||||||||||||| ||||||    
T  1389956 tatgaagcacggacactccttggattaggcatgtcctggtgtcggacacac 1389906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 198 - 248
Target Start/End: Original strand, 34185052 - 34185102
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacaca 248  Q
    |||||||||||||||||| |||||||||||| ||||| ||||||| |||||    
T  34185052 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacaca 34185102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 49651714 - 49651760
Alignment:
Q  196 acctatgaagcacggacacttctcggattaggcttgtcctggtgtcg 242  Q
    ||||||||||||||||||||||||||||||||  ||||| |||||||    
T  49651714 acctatgaagcacggacacttctcggattaggtgtgtcccggtgtcg 49651760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 27505370 - 27505321
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    |||||||||||||||||| |||||||||||| ||||| ||||||| ||||    
T  27505370 ctatgaagcacggacactcctcggattaggcatgtcccggtgtcggacac 27505321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 279
Target Start/End: Complemental strand, 25775624 - 25775538
Alignment:
Q  200 atgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac-------acggcaccgacacttgtaattacacttaatta 279  Q
    |||||||||| ||||| |||||||||||| ||||||||||||| ||||        || |||||||||||||||||||||| |||||    
T  25775624 atgaagcacgaacactcctcggattaggcgtgtcctggtgtcggacacgacgtgtccgacaccgacacttgtaattacactgaatta 25775538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 40052434 - 40052382
Alignment:
Q  195 aacctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    ||||||||||||||| ||||| |||||||||||| ||||| ||||||| ||||    
T  40052434 aacctatgaagcacgaacactcctcggattaggcgtgtcccggtgtcggacac 40052382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 241
Target Start/End: Complemental strand, 20503584 - 20503541
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtc 241  Q
    |||||||||||||||||| |||||||||||| ||||| ||||||    
T  20503584 ctatgaagcacggacactcctcggattaggcgtgtcccggtgtc 20503541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 200 - 247
Target Start/End: Original strand, 24204983 - 24205030
Alignment:
Q  200 atgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    |||||||||||||||| |||| ||||||| ||||||||||||| ||||    
T  24204983 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcggacac 24205030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 228
Target Start/End: Complemental strand, 27903758 - 27903727
Alignment:
Q  197 cctatgaagcacggacacttctcggattaggc 228  Q
    ||||||||||||||||||||||||||||||||    
T  27903758 cctatgaagcacggacacttctcggattaggc 27903727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 198 - 279
Target Start/End: Original strand, 4990912 - 4990997
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtc-ga-ac--acacggcaccgacacttgtaattacacttaatta 279  Q
    |||||||||||||||||| |||||||||||| |||||  ||||| || ||  ||||| | |||||||||||||||||||| |||||    
T  4990912 ctatgaagcacggacactcctcggattaggcgtgtccacgtgtctgataccaacacgacgccgacacttgtaattacactgaatta 4990997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 241
Target Start/End: Complemental strand, 14979271 - 14979225
Alignment:
Q  195 aacctatgaagcacggacacttctcggattaggcttgtcctggtgtc 241  Q
    ||||||||||||||||||||| ||||| |||||| ||||| ||||||    
T  14979271 aacctatgaagcacggacactcctcgggttaggcgtgtcccggtgtc 14979225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 242
Target Start/End: Original strand, 40993273 - 40993319
Alignment:
Q  196 acctatgaagcacggacacttctcggattaggcttgtcctggtgtcg 242  Q
    |||||||||||| ||||||| |||||||||||| ||||| |||||||    
T  40993273 acctatgaagcatggacactcctcggattaggcgtgtcccggtgtcg 40993319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 227
Target Start/End: Complemental strand, 17276846 - 17276817
Alignment:
Q  198 ctatgaagcacggacacttctcggattagg 227  Q
    ||||||||||||||||||||||||||||||    
T  17276846 ctatgaagcacggacacttctcggattagg 17276817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 279
Target Start/End: Complemental strand, 27505308 - 27505275
Alignment:
Q  246 acacggcaccgacacttgtaattacacttaatta 279  Q
    ||||| ||||||||||||||||||||||||||||    
T  27505308 acacgacaccgacacttgtaattacacttaatta 27505275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 55401194 - 55401145
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    |||||||||||||||||| |||||||||||| ||||  ||||||| ||||    
T  55401194 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcggacac 55401145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 14209246 - 14209214
Alignment:
Q  195 aacctatgaagcacggacacttctcggattagg 227  Q
    |||||||||||||||||||||||| ||||||||    
T  14209246 aacctatgaagcacggacacttcttggattagg 14209214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 227
Target Start/End: Complemental strand, 14217021 - 14216993
Alignment:
Q  199 tatgaagcacggacacttctcggattagg 227  Q
    |||||||||||||||||||||||||||||    
T  14217021 tatgaagcacggacacttctcggattagg 14216993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 227
Target Start/End: Complemental strand, 14223150 - 14223122
Alignment:
Q  199 tatgaagcacggacacttctcggattagg 227  Q
    |||||||||||||||||||||||||||||    
T  14223150 tatgaagcacggacacttctcggattagg 14223122  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 43565002 - 43564950
Alignment:
Q  196 acctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacaca 248  Q
    ||||||||||||||||||||||||||||||||| ||||| || |||| |||||    
T  43565002 acctatgaagcacggacacttctcggattaggcgtgtcccggcgtcggacaca 43564950  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 196 - 227
Target Start/End: Original strand, 7218216 - 7218247
Alignment:
Q  196 acctatgaagcacggacacttctcggattagg 227  Q
    ||||||||||||||||||||||||||||||||    
T  7218216 acctatgaagcacggacacttctcggattagg 7218247  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 197 - 240
Target Start/End: Complemental strand, 14873642 - 14873599
Alignment:
Q  197 cctatgaagcacggacacttctcggattaggcttgtcctggtgt 240  Q
    ||||||||||||||||||| |||||||||||| ||||| |||||    
T  14873642 cctatgaagcacggacactcctcggattaggcgtgtcccggtgt 14873599  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 2437030 - 2436981
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    |||||||||||| ||||| |||||||||||| |||| |||||||| ||||    
T  2437030 ctatgaagcacgaacactcctcggattaggcgtgtcttggtgtcggacac 2436981  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 10298670 - 10298633
Alignment:
Q  197 cctatgaagcacggacacttctcggattaggcttgtcc 234  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  10298670 cctatgaagcacggacactcctcggattaggcgtgtcc 10298633  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 6247732 - 6247700
Alignment:
Q  195 aacctatgaagcacggacacttctcggattagg 227  Q
    |||||||||||||| ||||||||||||||||||    
T  6247732 aacctatgaagcacagacacttctcggattagg 6247700  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 6326252 - 6326296
Alignment:
Q  197 cctatgaagcacggacacttctcggattaggcttgtcctggtgtc 241  Q
    |||||||||||||||||||||||| ||||||| ||| | ||||||    
T  6326252 cctatgaagcacggacacttctcgaattaggcgtgttccggtgtc 6326296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 17123166 - 17123130
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcc 234  Q
    |||||||||||||||||| |||||||||||| |||||    
T  17123166 ctatgaagcacggacactcctcggattaggcgtgtcc 17123130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 19820328 - 19820372
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcg 242  Q
    |||||||||||||||||| ||| |||||||| ||||| |||||||    
T  19820328 ctatgaagcacggacactcctctgattaggcgtgtcccggtgtcg 19820372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 21576685 - 21576721
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcc 234  Q
    |||||||||||||||||| |||||||||||| |||||    
T  21576685 ctatgaagcacggacactcctcggattaggcgtgtcc 21576721  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 22423764 - 22423800
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcc 234  Q
    |||||||||||||||||| |||||||||||| |||||    
T  22423764 ctatgaagcacggacactcctcggattaggcgtgtcc 22423800  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 35017162 - 35017126
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcc 234  Q
    |||||||||||||||||| |||||||||||| |||||    
T  35017162 ctatgaagcacggacactcctcggattaggcgtgtcc 35017126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 242
Target Start/End: Complemental strand, 39698671 - 39698627
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcg 242  Q
    |||||||||||||||||| |||||||||||| ||||  |||||||    
T  39698671 ctatgaagcacggacactcctcggattaggcgtgtctcggtgtcg 39698627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 240
Target Start/End: Complemental strand, 43001922 - 43001882
Alignment:
Q  200 atgaagcacggacacttctcggattaggcttgtcctggtgt 240  Q
    |||||||||||||||| |||||||||||| ||||| |||||    
T  43001922 atgaagcacggacactcctcggattaggcgtgtccaggtgt 43001882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000006; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 37419876 - 37419824
Alignment:
Q  195 aacctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    ||||||||||||||||||||| |||||||||||| ||||| ||||||| ||||    
T  37419876 aacctatgaagcacggacactcctcggattaggcgtgtcccggtgtcggacac 37419824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 203 - 273
Target Start/End: Original strand, 23058389 - 23058466
Alignment:
Q  203 aagcacggacacttctcggattaggcttgtcctggtgtcgaac-------acacggcaccgacacttgtaattacact 273  Q
    |||||||||||||||||||||||||| ||||| ||||||| ||       ||||| ||||||||||||||||||||||    
T  23058389 aagcacggacacttctcggattaggcgtgtcccggtgtcggacaacaccgacacgacaccgacacttgtaattacact 23058466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 241
Target Start/End: Original strand, 10535685 - 10535728
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtc 241  Q
    |||||||||||| ||||| |||||||||||| ||||||||||||    
T  10535685 ctatgaagcacgaacactcctcggattaggcgtgtcctggtgtc 10535728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 200 - 242
Target Start/End: Original strand, 2438661 - 2438703
Alignment:
Q  200 atgaagcacggacacttctcggattaggcttgtcctggtgtcg 242  Q
    |||||||||||||||| |||||||||||| ||||| |||||||    
T  2438661 atgaagcacggacactcctcggattaggcgtgtcccggtgtcg 2438703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 196 - 246
Target Start/End: Complemental strand, 37497242 - 37497192
Alignment:
Q  196 acctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaaca 246  Q
    ||||||||||||||||||||||| ||||||| | ||||| |||| ||||||    
T  37497242 acctatgaagcacggacacttctgggattagccatgtcccggtgccgaaca 37497192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 18420363 - 18420412
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    ||||||||||| ||||||||||||||||||| |||| |  ||||||||||    
T  18420363 ctatgaagcacagacacttctcggattaggcgtgtcataatgtcgaacac 18420412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 26769641 - 26769592
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    |||||||||||||||||| |||||||||||| |||||  |||||| ||||    
T  26769641 ctatgaagcacggacactcctcggattaggcgtgtcccagtgtcggacac 26769592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 38117099 - 38117148
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    |||||||||||||||||  |||||||||||| ||||| ||||||| ||||    
T  38117099 ctatgaagcacggacacccctcggattaggcgtgtcccggtgtcggacac 38117148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 242
Target Start/End: Original strand, 18840953 - 18840997
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcg 242  Q
    |||||||||||||||||| |||||||||||  ||||| |||||||    
T  18840953 ctatgaagcacggacactcctcggattaggtgtgtcccggtgtcg 18840997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 21616868 - 21616836
Alignment:
Q  194 aaacctatgaagcacggacacttctcggattag 226  Q
    ||||||||||||||||||||||||| |||||||    
T  21616868 aaacctatgaagcacggacacttcttggattag 21616836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 200 - 247
Target Start/End: Original strand, 225199 - 225246
Alignment:
Q  200 atgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    |||||||||||||||| |||| ||||||| ||||||||||||||||||    
T  225199 atgaagcacggacactcctcgaattaggcgtgtcctggtgtcgaacac 225246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 273
Target Start/End: Complemental strand, 188512 - 188446
Alignment:
Q  205 gcacggacacttctcggattaggcttgtcctggtgtcgaacacacggcaccgacacttgtaattacact 273  Q
    ||||||||||| |||||||||||| |||||||||||||   | ||| ||||||||||||| ||||||||    
T  188512 gcacggacactcctcggattaggcgtgtcctggtgtcg--gatacgacaccgacacttgttattacact 188446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 233
Target Start/End: Complemental strand, 21152 - 21114
Alignment:
Q  195 aacctatgaagcacggacacttctcggattaggcttgtc 233  Q
    ||||||||||||||||| |||||||||||||||| ||||    
T  21152 aacctatgaagcacggatacttctcggattaggcgtgtc 21114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 233
Target Start/End: Complemental strand, 21410 - 21372
Alignment:
Q  195 aacctatgaagcacggacacttctcggattaggcttgtc 233  Q
    |||||||||||||| ||||||||||||||||||| ||||    
T  21410 aacctatgaagcacagacacttctcggattaggcgtgtc 21372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 199 - 241
Target Start/End: Complemental strand, 92940 - 92898
Alignment:
Q  199 tatgaagcacggacacttctcggattaggcttgtcctggtgtc 241  Q
    ||||||||||||||||| |||||||||||| ||||| ||||||    
T  92940 tatgaagcacggacactcctcggattaggcgtgtccaggtgtc 92898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 3428 - 3391
Alignment:
Q  197 cctatgaagcacggacacttctcggattaggcttgtcc 234  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  3428 cctatgaagcacggacactcctcggattaggcgtgtcc 3391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 247
Target Start/End: Complemental strand, 3058 - 3009
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    ||||| |||||||||||| |||||||||||| ||| | ||||||||||||    
T  3058 ctatggagcacggacactcctcggattaggcgtgttccggtgtcgaacac 3009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0793 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 234
Target Start/End: Original strand, 4821 - 4857
Alignment:
Q  198 ctatgaagcacggacacttctcggattaggcttgtcc 234  Q
    |||||||||||||||||| |||||||||||| |||||    
T  4821 ctatgaagcacggacactcctcggattaggcgtgtcc 4857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0652 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 199 - 247
Target Start/End: Original strand, 403 - 451
Alignment:
Q  199 tatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    ||||||||||||||||| |||||||||||  ||||| ||||||| ||||    
T  403 tatgaagcacggacactcctcggattaggtgtgtcccggtgtcggacac 451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 247
Target Start/End: Complemental strand, 71858 - 71806
Alignment:
Q  195 aacctatgaagcacggacacttctcggattaggcttgtcctggtgtcgaacac 247  Q
    |||||||||||||| |||||| |||||||||| | ||||| ||||||| ||||    
T  71858 aacctatgaagcaccgacactcctcggattagtcgtgtcccggtgtcggacac 71806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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