View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20895_low_13 (Length: 275)
Name: NF20895_low_13
Description: NF20895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20895_low_13 |
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Alignment Details
Target: chr6 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 17 - 269
Target Start/End: Complemental strand, 35042525 - 35042280
Alignment:
| Q |
17 |
atggagtacagaagggaagcttattcttatcttggtaatgttctttggtagactcaagaaattcaatatgaatggtggcaaggcatggcacctgtcctag |
116 |
Q |
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| T |
35042525 |
atggagtacagaagggaagcttattcttatcttggtaatgttctttgggagactcaagaaattcaatatgaatggtggcaaggcatggcacctgtcctag |
35042426 |
T |
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| Q |
117 |
ctaacagggtcaaaattctctctatttaattaatatacacttttataatttgaacaaagatagatcaagatcctctatatttcttaggctccaatcacat |
216 |
Q |
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| T |
35042425 |
ctaacagggtcaaaattctctccat----ttaatatacactttt---atttgaagaatgatagatcaagatcctctatatttcttaggctccaatcacat |
35042333 |
T |
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| Q |
217 |
aaatatgaaattggtggcatccaagttaaaattgggacccatgtctgtgctcc |
269 |
Q |
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| T |
35042332 |
aaatatgaaattggtggcacccaagttaaaattgggacccatgtttgtgctcc |
35042280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 34988962 - 34988863
Alignment:
| Q |
18 |
tggagtacagaagggaagcttattcttatcttggtaatgttctttggtagactcaagaaattcaatatgaatggtggcaaggcatggcacctgtcctagc |
117 |
Q |
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| T |
34988962 |
tggagtgcaaaagggaagtttatccttattttggtaatgttctttgggatgctcaagaaattcaatatgaatggtggcaaagcatggaacttgtcctagc |
34988863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 115
Target Start/End: Original strand, 15560139 - 15560236
Alignment:
| Q |
18 |
tggagtacagaagggaagcttattcttatcttggtaatgttctttggtagactcaagaaattcaatatgaatggtggcaaggcatggcacctgtccta |
115 |
Q |
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| T |
15560139 |
tggagtacagaggggaagtgtatccttatattggttatgttctttggtaggctcaagagattcaatatgaaaggaggcaaagcctggcacctgtccta |
15560236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 115
Target Start/End: Complemental strand, 15559796 - 15559699
Alignment:
| Q |
18 |
tggagtacagaagggaagcttattcttatcttggtaatgttctttggtagactcaagaaattcaatatgaatggtggcaaggcatggcacctgtccta |
115 |
Q |
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| T |
15559796 |
tggagtacagaggggaagtgtatccttatattggttatgttctttgggaggctcaagagattcaatatgaaaggaggcaaagcctggcacctgtccta |
15559699 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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