View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20895_low_14 (Length: 260)
Name: NF20895_low_14
Description: NF20895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20895_low_14 |
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| [»] chr8 (2 HSPs) |
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| [»] scaffold0455 (1 HSPs) |
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| [»] scaffold0038 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 44680085 - 44679826
Alignment:
| Q |
1 |
agctcttgttgtggtggtggtggtttgatgaggaagaggatgtgtttagagagggatttcatggtaaaacgtggtaatttgaagggtaaaatctgatggc |
100 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
44680085 |
agctcttattgtggtggtggtggtttgatgaggaagaggatgtgtttagagagggatttcatggtaaaacgtggcaatttgaagggtaaaatctgatggc |
44679986 |
T |
|
| Q |
101 |
ggtgatttgagatggaagatcggcgccacatggaacaaaccgatcgaaagctaatgagatcgagatctttatcgaatagttgcgatatcagattgacaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
44679985 |
ggtgatttgagatggaagatcggcgccacatggaacaaaccgatcgaaagctaatgagatcgagatctttagcgaatagttgcgatatcagattgacaag |
44679886 |
T |
|
| Q |
201 |
atcatttggaagttcagaccaatctacctccgccatggaagctgctattctcttcttttc |
260 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44679885 |
atcatttggaagttcagaccaatctacctccgccatggaagctgctattctcttcttttc |
44679826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 6 - 260
Target Start/End: Complemental strand, 44688163 - 44687909
Alignment:
| Q |
6 |
ttgttgtggtggtggtggtttgatgaggaagaggatgtgtttagagagggatttcatggtaaaacgtggtaatttgaagggtaaaatctgatggcggtga |
105 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||||||||||||| || ||| ||||| |||||||||||||||||||||||||||| ||||| |
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| T |
44688163 |
ttgttgtgctggtggtggtttgatgaggaagaggacgtgtttagagagggatctcgtggaaaaacttggtaatttgaagggtaaaatctgatggtggtga |
44688064 |
T |
|
| Q |
106 |
tttgagatggaagatcggcgccacatggaacaaaccgatcgaaagctaatgagatcgagatctttatcgaatagttgcgatatcagattgacaagatcat |
205 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44688063 |
tttgagatggaagatcggcgccacatggaacaaaccgatcgaaagctaatgagatcgagatctttatcgaatagttgcgatatcagattgacaagatcag |
44687964 |
T |
|
| Q |
206 |
ttggaagttcagaccaatctacctccgccatggaagctgctattctcttcttttc |
260 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||| ||||||||||| |
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|
| T |
44687963 |
ttggaagttcagaccaatctacctctgccatggaagcttctatcctcttcttttc |
44687909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 239
Target Start/End: Original strand, 9344707 - 9344815
Alignment:
| Q |
131 |
tggaacaaaccgatcgaaagctaatgagatcgagatctttatcgaatagttgcgatatcagattgacaagatcatttggaagttcagaccaatctacctc |
230 |
Q |
| |
|
|||||||||| |||||||||| ||||||||| || || || |||| |||||||||| ||||||| |||||| ||||| ||||||||||||||| | || |
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| T |
9344707 |
tggaacaaacagatcgaaagcgaatgagatcaagttcattgtcgaggcgttgcgatataagattgagaagatcctttgggagttcagaccaatctgcatc |
9344806 |
T |
|
| Q |
231 |
cgccatgga |
239 |
Q |
| |
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|||||||| |
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|
| T |
9344807 |
tgccatgga |
9344815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 130 - 239
Target Start/End: Original strand, 9449159 - 9449268
Alignment:
| Q |
130 |
atggaacaaaccgatcgaaagctaatgagatcgagatctttatcgaatagttgcgatatcagattgacaagatcatttggaagttcagaccaatctacct |
229 |
Q |
| |
|
||||||||||| |||||||| | |||||||||||| || || |||| ||| ||||| ||||||| ||| || ||||| |||| |||||||||| ||| |
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| T |
9449159 |
atggaacaaactgatcgaaaacgaatgagatcgagttcattgtcgagcctttgtgatatgagattgagaagttcctttgggagttgagaccaatctgcct |
9449258 |
T |
|
| Q |
230 |
ccgccatgga |
239 |
Q |
| |
|
| |||||||| |
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|
| T |
9449259 |
cagccatgga |
9449268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 101 - 190
Target Start/End: Original strand, 41986516 - 41986605
Alignment:
| Q |
101 |
ggtgatttgagatggaagatcggcgccacatggaacaaaccgatcgaaagctaatgagatcgagatctttatcgaatagttgcgatatca |
190 |
Q |
| |
|
||||||||||||||||||| | |||||| | |||||||| ||||| || | ||||||||| ||||| || |||||| |||| ||||||| |
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|
| T |
41986516 |
ggtgatttgagatggaagagcaccgccacgtcgaacaaactgatcggaaacgaatgagatcaagatcattgtcgaatcgttgtgatatca |
41986605 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 41981703 - 41981759
Alignment:
| Q |
101 |
ggtgatttgagatggaagatcggcgccacatggaacaaaccgatcgaaagctaatga |
157 |
Q |
| |
|
||||||||||||||| ||| | |||||| | |||||||||||| |||||||||||| |
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|
| T |
41981703 |
ggtgatttgagatgggagaactccgccacgtcgaacaaaccgatagaaagctaatga |
41981759 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 41986400 - 41986448
Alignment:
| Q |
6 |
ttgttgtggtggtggtggtttgatgaggaagaggatgtgtttagagagg |
54 |
Q |
| |
|
||||||| ||||||||||||||||||| ||||| ||||||| |||||| |
|
|
| T |
41986400 |
ttgttgttgtggtggtggtttgatgagtaagagactgtgttttgagagg |
41986448 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 142 - 228
Target Start/End: Complemental strand, 250647 - 250561
Alignment:
| Q |
142 |
gatcgaaagctaatgagatcgagatctttatcgaatagttgcgatatcagattgacaagatcatttggaagttcagaccaatctacc |
228 |
Q |
| |
|
||||| |||||| ||||||||| | || ||||||||||||||||||||||| | ||| || |||||||||||||||||||||||| |
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|
| T |
250647 |
gatcggaagctattgagatcgattttgttgtcgaatagttgcgatatcagattcaaaaggtcgtttggaagttcagaccaatctacc |
250561 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 142 - 231
Target Start/End: Complemental strand, 8813642 - 8813553
Alignment:
| Q |
142 |
gatcgaaagctaatgagatcgagatctttatcgaatagttgcgatatcagattgacaagatcatttggaagttcagaccaatctacctcc |
231 |
Q |
| |
|
||||| |||| ||||||||||| || || |||||| |||||||||||||||| | ||| || | ||| ||||||||||| ||| ||||| |
|
|
| T |
8813642 |
gatcggaagcgaatgagatcgatttcgttgtcgaattgttgcgatatcagattcagaagctcctgtggcagttcagaccagtctgcctcc |
8813553 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0455 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0455
Description:
Target: scaffold0455; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 237
Target Start/End: Complemental strand, 10938 - 10832
Alignment:
| Q |
131 |
tggaacaaaccgatcgaaagctaatgagatcgagatctttatcgaatagttgcgatatcagattgacaagatcatttggaagttcagaccaatctacctc |
230 |
Q |
| |
|
|||||||||| |||||| | | ||||||||| || || || ||| | |||| ||||||||||||| |||||| |||||||||| |||||||||| |||| |
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|
| T |
10938 |
tggaacaaacagatcgataacgaatgagatcaagttcattgacgagtcgttgagatatcagattgagaagatcctttggaagttgagaccaatctgcctc |
10839 |
T |
|
| Q |
231 |
cgccatg |
237 |
Q |
| |
|
|||||| |
|
|
| T |
10838 |
tgccatg |
10832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 131 - 237
Target Start/End: Complemental strand, 28133032 - 28132926
Alignment:
| Q |
131 |
tggaacaaaccgatcgaaagctaatgagatcgagatctttatcgaatagttgcgatatcagattgacaagatcatttggaagttcagaccaatctacctc |
230 |
Q |
| |
|
|||||||||| |||||| | | ||||||||| || || || ||| | |||| ||||||||||||| |||||| |||||||||| |||||||||| |||| |
|
|
| T |
28133032 |
tggaacaaacagatcgataacgaatgagatcaagttcattgacgagtcgttgagatatcagattgagaagatcctttggaagttgagaccaatctgcctc |
28132933 |
T |
|
| Q |
231 |
cgccatg |
237 |
Q |
| |
|
|||||| |
|
|
| T |
28132932 |
tgccatg |
28132926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 28219985 - 28220078
Alignment:
| Q |
142 |
gatcgaaagctaatgagatcgagatctttatcgaatagttgcgatatcagattgacaagatcatttggaagttcagaccaatctacctccgcca |
235 |
Q |
| |
|
|||||||| | |||||||||||| || || |||| | |||| ||||||||||||| |||||| |||||||| | |||||||||| |||| |||| |
|
|
| T |
28219985 |
gatcgaaaacgaatgagatcgagttcattgtcgagtcgttgtgatatcagattgagaagatcctttggaagctgagaccaatctgcctctgcca |
28220078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 235
Target Start/End: Original strand, 28177219 - 28177311
Alignment:
| Q |
143 |
atcgaaagctaatgagatcgagatctttatcgaatagttgcgatatcagattgacaagatcatttggaagttcagaccaatctacctccgcca |
235 |
Q |
| |
|
||||||| | |||||||||||| || || |||| | |||| ||||||||||||| |||||| |||||||| | |||||||||| |||| |||| |
|
|
| T |
28177219 |
atcgaaaacgaatgagatcgagttcattgtcgagtcgttgtgatatcagattgagaagatcctttggaagctgagaccaatctgcctctgcca |
28177311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 131 - 237
Target Start/End: Complemental strand, 28177134 - 28177028
Alignment:
| Q |
131 |
tggaacaaaccgatcgaaagctaatgagatcgagatctttatcgaatagttgcgatatcagattgacaagatcatttggaagttcagaccaatctacctc |
230 |
Q |
| |
|
|||||||||| |||||||| | ||||||||||| || | |||| | |||| ||||||||||||| |||||| |||||||| | | |||||||| |||| |
|
|
| T |
28177134 |
tggaacaaacagatcgaaaacaaatgagatcgacttcactgtcgagttgttgtgatatcagattgagaagatcctttggaagctgataccaatctgcctc |
28177035 |
T |
|
| Q |
231 |
cgccatg |
237 |
Q |
| |
|
|||||| |
|
|
| T |
28177034 |
tgccatg |
28177028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 28219853 - 28219795
Alignment:
| Q |
179 |
gttgcgatatcagattgacaagatcatttggaagttcagaccaatctacctccgccatg |
237 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||||||| |||||||||| |||| |||||| |
|
|
| T |
28219853 |
gttgtgatatcagattgagaagatcctttggaagttgagaccaatctgcctctgccatg |
28219795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 239
Target Start/End: Original strand, 9171686 - 9171792
Alignment:
| Q |
133 |
gaacaaaccgatcgaaagctaatgagatcgagatctttatcgaatagttgcgatatcagattgacaagatcatttggaagttcagaccaatctacctccg |
232 |
Q |
| |
|
|||||||| ||| |||||| ||||||||||| || | || || | |||| ||||||||||||| |||||| |||||||||| || ||| || ||| | | |
|
|
| T |
9171686 |
gaacaaactgattgaaagcgaatgagatcgacttcatcatagattcgttgtgatatcagattgagaagatcctttggaagtttagtccagtcgaccgctg |
9171785 |
T |
|
| Q |
233 |
ccatgga |
239 |
Q |
| |
|
||||||| |
|
|
| T |
9171786 |
ccatgga |
9171792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 142 - 235
Target Start/End: Original strand, 20483 - 20576
Alignment:
| Q |
142 |
gatcgaaagctaatgagatcgagatctttatcgaatagttgcgatatcagattgacaagatcatttggaagttcagaccaatctacctccgcca |
235 |
Q |
| |
|
|||||||| | |||||||||||| || || |||| | |||| ||||||||||||| |||||| |||||||| | |||||||||| |||| |||| |
|
|
| T |
20483 |
gatcgaaaacgaatgagatcgagttcattgtcgagtcgttgtgatatcagattgagaagatcctttggaagctgagaccaatctgcctctgcca |
20576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 179 - 237
Target Start/End: Complemental strand, 20351 - 20293
Alignment:
| Q |
179 |
gttgcgatatcagattgacaagatcatttggaagttcagaccaatctacctccgccatg |
237 |
Q |
| |
|
|||| ||||||||||||| |||||| |||||||||| |||||||||| |||| |||||| |
|
|
| T |
20351 |
gttgtgatatcagattgagaagatcctttggaagttgagaccaatctgcctctgccatg |
20293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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