View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20895_low_15 (Length: 218)
Name: NF20895_low_15
Description: NF20895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20895_low_15 |
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| [»] chr4 (6 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 2626627 - 2626410
Alignment:
| Q |
1 |
ttctcattactttcttcttcaccaatgacattatttgtagctgaagtgttgtccttttagcttagatccaagagggaaaccatgcttcttaaaacaagtt |
100 |
Q |
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| T |
2626627 |
ttctcattacgttcttcttcacgaatgacattatttgtagccgaagtgttgtccttttagcttatatccaagagggaaaccatgcttcttaaaacaagtt |
2626528 |
T |
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| Q |
101 |
tcgatagtgtggccaattccgccatagtaaaactcaaatgaaatgctaagaatcatttatccaaaataaactattacatctcttacactatgctatatca |
200 |
Q |
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| T |
2626527 |
tcgatagtgtggccaattccgccacagtaaaactcaaatgaaatgctaagaatcatttatccaaaataaattattacatctcttacactatgctatatca |
2626428 |
T |
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| Q |
201 |
tagaatgtagttcatcaa |
218 |
Q |
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| T |
2626427 |
tataatgtagttcatcaa |
2626410 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 13 - 159
Target Start/End: Complemental strand, 2361773 - 2361628
Alignment:
| Q |
13 |
tcttcttcaccaatgacattatttgtagctgaagtgttgtccttttagcttagatccaagagggaaaccatgcttcttaaaacaagtttcgatagtgtgg |
112 |
Q |
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| T |
2361773 |
tcttcttcaccaatgacattataagcagctgaagtatt-tccctttggcttagatcgaggagggaaaccatgcttcttaaaactagttttgtttgcaagg |
2361675 |
T |
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| Q |
113 |
ccaattccgccatagtaaaactcaaatgaaatgctaagaatcattta |
159 |
Q |
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| T |
2361674 |
tcaattctaccacagtaaaactaaattaaaattctaagaatcattta |
2361628 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 92
Target Start/End: Complemental strand, 2364335 - 2364259
Alignment:
| Q |
16 |
tcttcaccaatgacattatttgtagctgaagtgttgtccttttagcttagatccaagagggaaaccatgcttcttaa |
92 |
Q |
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| T |
2364335 |
tcttcaccaatgacactatttgcagctcaagtattttctgcttggcttagatacaagagggaaaccatgcttcttaa |
2364259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 94
Target Start/End: Complemental strand, 2377447 - 2377366
Alignment:
| Q |
13 |
tcttcttcaccaatgacattatttgtagctgaagtgttgtccttttagcttagatccaagagggaaaccatgcttcttaaaa |
94 |
Q |
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| T |
2377447 |
tcttctttaccaatgacattattcacagatgaagcgtttttcctttggtttagatccaagagggaaaccattcttcttaaaa |
2377366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 214
Target Start/End: Complemental strand, 2381133 - 2381087
Alignment:
| Q |
168 |
aaactattacatctcttacactatgctatatcatagaatgtagttca |
214 |
Q |
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| T |
2381133 |
aaactattacatctcttatactataatatatcatataatgtagttca |
2381087 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 159
Target Start/End: Original strand, 2544307 - 2544361
Alignment:
| Q |
105 |
tagtgtggccaattccgccatagtaaaactcaaatgaaatgctaagaatcattta |
159 |
Q |
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| T |
2544307 |
tagtgtggccaattctaccacagtaaaactcaaacaaaattctaagaatcattta |
2544361 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 96
Target Start/End: Original strand, 12354570 - 12354653
Alignment:
| Q |
13 |
tcttcttcaccaatgacattatttgtagctgaagtgttgtccttttagcttagatccaagagggaaaccatgcttcttaaaaca |
96 |
Q |
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| T |
12354570 |
tcttcttgaccaatgacattattcacagcttaagcatttttcctttggcttagatccaagagggaaaccattcttcttaaaaca |
12354653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 39536501 - 39536453
Alignment:
| Q |
60 |
gcttagatccaagagggaaaccatgcttcttaaaacaagtttcgatagt |
108 |
Q |
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| T |
39536501 |
gcttagatcgaagagtgaaatcgtgcttcttaaaacaagtttccatagt |
39536453 |
T |
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