View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20895_low_3 (Length: 441)
Name: NF20895_low_3
Description: NF20895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20895_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 428
Target Start/End: Original strand, 33048438 - 33048848
Alignment:
| Q |
19 |
cattagatacttccaactatatttatgttcttttccttgtcctgttttctaagcttctataccaatcaagttgaaaattagcaccgtcagtaaataaata |
118 |
Q |
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| T |
33048438 |
cattagacacttccaactatatttatgttcttttccttgtcctgttttctaagcttctataccaatcaagttgaaaattagcaccgtcggtaaataaata |
33048537 |
T |
|
| Q |
119 |
acatcactttactacatttacaaatttaatgatcaaggattaagggaatgc-ttcttatcttctccaaagaagtggatttttattcccatcaaagcaact |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33048538 |
acatcactttactacatttacaaatttaatgatcaaggattaagggaatgaattcttatcttctccaaagaagtgggtttttattcccatcaaagcaact |
33048637 |
T |
|
| Q |
218 |
aaactgaaaatcatgcttggtgaacaaacctctctccaggagatcttcttacgctgagactgctcagactagtacttagggctcgtggtttagttgatta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33048638 |
aaactgaaaatcatgcttggtgaacaaacctctctccaggagatcttcttacgctgagactgctcagactagtacttagggctcgtggtttagttgatta |
33048737 |
T |
|
| Q |
318 |
tttttgtttggttaaaattgattggcgtttagacctatgcagtaatcctctaggttggcctacgctggcatccccatgccattggtgccatcacaatcag |
417 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33048738 |
tttttgtttggttaaaattgattggcatttagacctatgcagtaatcctctaggttggcctacgctggcatccccatgccattggcgccatcacaatcag |
33048837 |
T |
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| Q |
418 |
taatgatgatg |
428 |
Q |
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||||||||||| |
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| T |
33048838 |
taatgatgatg |
33048848 |
T |
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