View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20895_low_5 (Length: 353)

Name: NF20895_low_5
Description: NF20895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20895_low_5
NF20895_low_5
[»] chr8 (5 HSPs)
chr8 (1-341)||(33048825-33049165)
chr8 (297-341)||(34201061-34201105)
chr8 (299-336)||(10441208-10441245)
chr8 (294-330)||(1586619-1586655)
chr8 (295-331)||(4298899-4298935)
[»] chr3 (6 HSPs)
chr3 (298-341)||(41319326-41319369)
chr3 (294-331)||(28576726-28576763)
chr3 (299-331)||(12704674-12704706)
chr3 (295-331)||(20503475-20503511)
chr3 (299-331)||(21110480-21110512)
chr3 (299-331)||(32166200-32166232)
[»] chr1 (6 HSPs)
chr1 (299-330)||(24701117-24701148)
chr1 (32-101)||(17420875-17420944)
chr1 (299-331)||(29230075-29230107)
chr1 (299-331)||(30847737-30847769)
chr1 (295-331)||(32461476-32461512)
chr1 (295-331)||(38078674-38078710)
[»] chr6 (7 HSPs)
chr6 (299-341)||(9024193-9024235)
chr6 (295-331)||(426527-426563)
chr6 (299-331)||(2493431-2493463)
chr6 (295-331)||(4118346-4118382)
chr6 (299-331)||(8148130-8148162)
chr6 (295-331)||(28715305-28715341)
chr6 (299-331)||(33076418-33076450)
[»] chr5 (8 HSPs)
chr5 (297-331)||(38749578-38749612)
chr5 (300-342)||(39750827-39750869)
chr5 (308-341)||(4344871-4344904)
chr5 (295-331)||(8420037-8420073)
chr5 (299-331)||(16881146-16881178)
chr5 (295-331)||(24906314-24906350)
chr5 (294-330)||(27253296-27253332)
chr5 (295-331)||(31084333-31084369)
[»] chr7 (2 HSPs)
chr7 (299-336)||(7241011-7241048)
chr7 (295-331)||(7438716-7438752)
[»] chr4 (9 HSPs)
chr4 (294-331)||(8457935-8457972)
chr4 (294-331)||(14465087-14465124)
chr4 (297-334)||(26276024-26276061)
chr4 (294-331)||(43093537-43093574)
chr4 (299-331)||(2976704-2976736)
chr4 (295-331)||(21945513-21945549)
chr4 (299-331)||(27096018-27096050)
chr4 (295-331)||(37203274-37203310)
chr4 (295-331)||(51701268-51701304)
[»] chr2 (2 HSPs)
chr2 (66-102)||(13632989-13633025)
chr2 (295-331)||(30335427-30335463)


Alignment Details
Target: chr8 (Bit Score: 313; Significance: 1e-176; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 33048825 - 33049165
Alignment:
Q  1 ccatcacaatcagtaatgatgatgatgatcttgcacaattggtataaactagttttacacttacgtccaacaagaattcaatattttgcagttattttaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  33048825 ccatcacaatcagtaatgatgatgatgatcttgcacaattggtataaactagttttacacttatgtccaacaagaattcaatattttgcagttattttaa 33048924  T
Q  101 atataaacacagttacaaagcggtcatgttgctatatgatgaatgaatcttcattaaacttttcaagtttttatataatattaatactaccatctttatc 200  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33048925 atataaacacagttacaaagcggtcatgttgctatatgatgagtgaatcttcattaaacttttcaagtttttatataatattaatactaccatctttatc 33049024  T
Q  201 tatcaaaacatacgtagcactgacacttctaattctaagttctaatcgaactggtgttcagtgtccaacacatgtgatatcaacatatgtattatgtaat 300  Q
    ||||||||||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  33049025 tatcaaaacatacttagcactgacacttctaattctaagttctaatagaactcgtgttcagtgtccaacacatgtgacatcaacatatgtattatgtaat 33049124  T
Q  301 tacattcaattatgtcattttttcaaattatcattagtgtc 341  Q
    |||||||||||||||||||||||||| ||||||||||||||    
T  33049125 tacattcaattatgtcattttttcaagttatcattagtgtc 33049165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 297 - 341
Target Start/End: Original strand, 34201061 - 34201105
Alignment:
Q  297 taattacattcaattatgtcattttttcaaattatcattagtgtc 341  Q
    |||||||||| |||||||||||||| ||||||||| |||||||||    
T  34201061 taattacattgaattatgtcattttctcaaattattattagtgtc 34201105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 336
Target Start/End: Complemental strand, 10441245 - 10441208
Alignment:
Q  299 attacattcaattatgtcattttttcaaattatcatta 336  Q
    |||||||| |||||||||||||| ||||||||||||||    
T  10441245 attacattgaattatgtcattttctcaaattatcatta 10441208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 1586655 - 1586619
Alignment:
Q  294 atgtaattacattcaattatgtcattttttcaaatta 330  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  1586655 atgtgattacgttcaattatgtcattttttcaaatta 1586619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 4298899 - 4298935
Alignment:
Q  295 tgtaattacattcaattatgtcattttttcaaattat 331  Q
    |||||||||||| |||||||| |||||||||||||||    
T  4298899 tgtaattacattaaattatgtgattttttcaaattat 4298935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 298 - 341
Target Start/End: Original strand, 41319326 - 41319369
Alignment:
Q  298 aattacattcaattatgtcattttttcaaattatcattagtgtc 341  Q
    ||||||||| |||||||||||||||||||||||| ||| |||||    
T  41319326 aattacattgaattatgtcattttttcaaattattattggtgtc 41319369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 331
Target Start/End: Complemental strand, 28576763 - 28576726
Alignment:
Q  294 atgtaattacattcaattatgtcattttttcaaattat 331  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  28576763 atgtaattacattcaattttgtcattttctcaaattat 28576726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 331
Target Start/End: Original strand, 12704674 - 12704706
Alignment:
Q  299 attacattcaattatgtcattttttcaaattat 331  Q
    |||||||| ||||||||||||||||||||||||    
T  12704674 attacattgaattatgtcattttttcaaattat 12704706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Complemental strand, 20503511 - 20503475
Alignment:
Q  295 tgtaattacattcaattatgtcattttttcaaattat 331  Q
    |||||||||| | ||||||||||||||||||||||||    
T  20503511 tgtaattacactgaattatgtcattttttcaaattat 20503475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 331
Target Start/End: Original strand, 21110480 - 21110512
Alignment:
Q  299 attacattcaattatgtcattttttcaaattat 331  Q
    ||||||||||||||||||||||| |||||||||    
T  21110480 attacattcaattatgtcattttctcaaattat 21110512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 331
Target Start/End: Original strand, 32166200 - 32166232
Alignment:
Q  299 attacattcaattatgtcattttttcaaattat 331  Q
    ||||||||||||||||||||||| |||||||||    
T  32166200 attacattcaattatgtcattttctcaaattat 32166232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000008; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 299 - 330
Target Start/End: Original strand, 24701117 - 24701148
Alignment:
Q  299 attacattcaattatgtcattttttcaaatta 330  Q
    ||||||||||||||||||||||||||||||||    
T  24701117 attacattcaattatgtcattttttcaaatta 24701148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 17420875 - 17420944
Alignment:
Q  32 tgcacaattggtataaactagttttacacttacgtccaacaagaattcaatattttgcagttattttaaa 101  Q
    |||||| || || |||||||||||||||||||||  |||  |||||  ||||||||| ||||||||||||    
T  17420875 tgcacagttagtgtaaactagttttacacttacggtcaatgagaataaaatattttgtagttattttaaa 17420944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 331
Target Start/End: Complemental strand, 29230107 - 29230075
Alignment:
Q  299 attacattcaattatgtcattttttcaaattat 331  Q
    ||||||||||||||||||||||| |||||||||    
T  29230107 attacattcaattatgtcattttctcaaattat 29230075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 331
Target Start/End: Original strand, 30847737 - 30847769
Alignment:
Q  299 attacattcaattatgtcattttttcaaattat 331  Q
    |||||||| ||||||||||||||||||||||||    
T  30847737 attacattgaattatgtcattttttcaaattat 30847769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 32461476 - 32461512
Alignment:
Q  295 tgtaattacattcaattatgtcattttttcaaattat 331  Q
    |||||||||||| |||||||| |||||||||||||||    
T  32461476 tgtaattacattaaattatgtgattttttcaaattat 32461512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 38078674 - 38078710
Alignment:
Q  295 tgtaattacattcaattatgtcattttttcaaattat 331  Q
    |||||||||||| |||||||| |||||||||||||||    
T  38078674 tgtaattacattgaattatgtgattttttcaaattat 38078710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 9024193 - 9024235
Alignment:
Q  299 attacattcaattatgtcattttttcaaattatcattagtgtc 341  Q
    |||||||| |||||||||||||| ||||||||||||| |||||    
T  9024193 attacattgaattatgtcattttctcaaattatcatttgtgtc 9024235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 426527 - 426563
Alignment:
Q  295 tgtaattacattcaattatgtcattttttcaaattat 331  Q
    |||||||||||| |||||||| |||||||||||||||    
T  426527 tgtaattacatttaattatgtgattttttcaaattat 426563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 331
Target Start/End: Original strand, 2493431 - 2493463
Alignment:
Q  299 attacattcaattatgtcattttttcaaattat 331  Q
    ||||||||||||||||||||||| |||||||||    
T  2493431 attacattcaattatgtcattttgtcaaattat 2493463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 4118346 - 4118382
Alignment:
Q  295 tgtaattacattcaattatgtcattttttcaaattat 331  Q
    |||||||||||| |||||||| |||||||||||||||    
T  4118346 tgtaattacatttaattatgtgattttttcaaattat 4118382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 331
Target Start/End: Complemental strand, 8148162 - 8148130
Alignment:
Q  299 attacattcaattatgtcattttttcaaattat 331  Q
    ||||||||||||||||||||||| |||||||||    
T  8148162 attacattcaattatgtcattttctcaaattat 8148130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Complemental strand, 28715341 - 28715305
Alignment:
Q  295 tgtaattacattcaattatgtcattttttcaaattat 331  Q
    |||||||||| | ||||||||||||||||||||||||    
T  28715341 tgtaattacactgaattatgtcattttttcaaattat 28715305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 331
Target Start/End: Complemental strand, 33076450 - 33076418
Alignment:
Q  299 attacattcaattatgtcattttttcaaattat 331  Q
    ||||||||||||||||||||||| |||||||||    
T  33076450 attacattcaattatgtcattttctcaaattat 33076418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 297 - 331
Target Start/End: Original strand, 38749578 - 38749612
Alignment:
Q  297 taattacattcaattatgtcattttttcaaattat 331  Q
    |||||||||| ||||||||||||||||||||||||    
T  38749578 taattacattgaattatgtcattttttcaaattat 38749612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 300 - 342
Target Start/End: Complemental strand, 39750869 - 39750827
Alignment:
Q  300 ttacattcaattatgtcattttttcaaattatcattagtgtct 342  Q
    |||||||||||||  ||||| ||||||||||||||||||||||    
T  39750869 ttacattcaattacttcattatttcaaattatcattagtgtct 39750827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 341
Target Start/End: Complemental strand, 4344904 - 4344871
Alignment:
Q  308 aattatgtcattttttcaaattatcattagtgtc 341  Q
    |||||||||||||||||||||||| |||||||||    
T  4344904 aattatgtcattttttcaaattattattagtgtc 4344871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Complemental strand, 8420073 - 8420037
Alignment:
Q  295 tgtaattacattcaattatgtcattttttcaaattat 331  Q
    |||||||||||| |||||||| |||||||||||||||    
T  8420073 tgtaattacattgaattatgttattttttcaaattat 8420037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 331
Target Start/End: Complemental strand, 16881178 - 16881146
Alignment:
Q  299 attacattcaattatgtcattttttcaaattat 331  Q
    |||||||| ||||||||||||||||||||||||    
T  16881178 attacattaaattatgtcattttttcaaattat 16881146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 24906314 - 24906350
Alignment:
Q  295 tgtaattacattcaattatgtcattttttcaaattat 331  Q
    |||||||||| | ||||||||||||||||||||||||    
T  24906314 tgtaattacactgaattatgtcattttttcaaattat 24906350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Complemental strand, 27253332 - 27253296
Alignment:
Q  294 atgtaattacattcaattatgtcattttttcaaatta 330  Q
    |||| |||||||||||||||| |||||||||||||||    
T  27253332 atgtgattacattcaattatgacattttttcaaatta 27253296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Complemental strand, 31084369 - 31084333
Alignment:
Q  295 tgtaattacattcaattatgtcattttttcaaattat 331  Q
    |||||||||||| |||||||| |||||||||||||||    
T  31084369 tgtaattacattgaattatgtgattttttcaaattat 31084333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 336
Target Start/End: Original strand, 7241011 - 7241048
Alignment:
Q  299 attacattcaattatgtcattttttcaaattatcatta 336  Q
    |||||||| ||||||||||||||||||||| |||||||    
T  7241011 attacattgaattatgtcattttttcaaatcatcatta 7241048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Complemental strand, 7438752 - 7438716
Alignment:
Q  295 tgtaattacattcaattatgtcattttttcaaattat 331  Q
    |||||||||||| |||||||| |||||||||||||||    
T  7438752 tgtaattacattgaattatgtgattttttcaaattat 7438716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 331
Target Start/End: Complemental strand, 8457972 - 8457935
Alignment:
Q  294 atgtaattacattcaattatgtcattttttcaaattat 331  Q
    |||| ||||||||||||||||||||||| |||||||||    
T  8457972 atgtgattacattcaattatgtcattttctcaaattat 8457935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 331
Target Start/End: Original strand, 14465087 - 14465124
Alignment:
Q  294 atgtaattacattcaattatgtcattttttcaaattat 331  Q
    ||||||||||||| |||||||| |||||||||||||||    
T  14465087 atgtaattacattgaattatgtgattttttcaaattat 14465124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 334
Target Start/End: Original strand, 26276024 - 26276061
Alignment:
Q  297 taattacattcaattatgtcattttttcaaattatcat 334  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  26276024 taattacattgaattatgtcattttctcaaattatcat 26276061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 331
Target Start/End: Original strand, 43093537 - 43093574
Alignment:
Q  294 atgtaattacattcaattatgtcattttttcaaattat 331  Q
    |||| |||||||||||||||| ||||||||||||||||    
T  43093537 atgtgattacattcaattatgccattttttcaaattat 43093574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 331
Target Start/End: Complemental strand, 2976736 - 2976704
Alignment:
Q  299 attacattcaattatgtcattttttcaaattat 331  Q
    ||||||||||||||||||||||| |||||||||    
T  2976736 attacattcaattatgtcattttctcaaattat 2976704  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Complemental strand, 21945549 - 21945513
Alignment:
Q  295 tgtaattacattcaattatgtcattttttcaaattat 331  Q
    |||||||||| | ||||||||||||||||||||||||    
T  21945549 tgtaattacactgaattatgtcattttttcaaattat 21945513  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 331
Target Start/End: Original strand, 27096018 - 27096050
Alignment:
Q  299 attacattcaattatgtcattttttcaaattat 331  Q
    ||||||||||||||||||||||| |||||||||    
T  27096018 attacattcaattatgtcattttgtcaaattat 27096050  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Complemental strand, 37203310 - 37203274
Alignment:
Q  295 tgtaattacattcaattatgtcattttttcaaattat 331  Q
    |||||||||| | ||||||||||||||||||||||||    
T  37203310 tgtaattacactaaattatgtcattttttcaaattat 37203274  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Complemental strand, 51701304 - 51701268
Alignment:
Q  295 tgtaattacattcaattatgtcattttttcaaattat 331  Q
    |||||||||| |||||||||| |||||||||||||||    
T  51701304 tgtaattacactcaattatgtaattttttcaaattat 51701268  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 13632989 - 13633025
Alignment:
Q  66 tccaacaagaattcaatattttgcagttattttaaat 102  Q
    ||||| |||||||||||||||| ||||||||||||||    
T  13632989 tccaataagaattcaatattttacagttattttaaat 13633025  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 295 - 331
Target Start/End: Complemental strand, 30335463 - 30335427
Alignment:
Q  295 tgtaattacattcaattatgtcattttttcaaattat 331  Q
    |||||||||| | ||||||||||||||||||||||||    
T  30335463 tgtaattacactaaattatgtcattttttcaaattat 30335427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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