View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20895_low_6 (Length: 329)

Name: NF20895_low_6
Description: NF20895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20895_low_6
NF20895_low_6
[»] chr4 (2 HSPs)
chr4 (19-286)||(50641545-50641812)
chr4 (118-194)||(14798457-14798534)
[»] scaffold0005 (1 HSPs)
scaffold0005 (118-194)||(41194-41271)
[»] chr7 (1 HSPs)
chr7 (118-194)||(31420692-31420769)
[»] chr6 (1 HSPs)
chr6 (118-194)||(95995-96072)
[»] chr5 (1 HSPs)
chr5 (118-194)||(22271637-22271714)
[»] chr3 (2 HSPs)
chr3 (118-194)||(2735323-2735400)
chr3 (118-194)||(40924369-40924446)
[»] chr2 (1 HSPs)
chr2 (130-194)||(5087421-5087486)
[»] chr1 (1 HSPs)
chr1 (123-194)||(27132142-27132214)


Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 50641545 - 50641812
Alignment:
Q  19 gtactatcaaatgattaagtttcatagattacacaagtttaagatggtgaagtactaaggttgatttaaaagtgtgacacacaaagagagaaataataat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50641545 gtactatcaaatgattaagtttcatagattacacaagtttaagatggtgaagtactaaggttgatttaaaagtgtgacacacaaagagagaaataataat 50641644  T
Q  119 gctcgtaaatcattccactctcctctcttattgctaacaccttcattcccttaccacaaatgctagaaacatcaagttaaagtataacgcataattcttt 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50641645 gctcgtaaatcattccactctcctctcttattgctaacaccttcattcccttaccacaaatgctagaaacatcaagttaaagtataacgcataattcttt 50641744  T
Q  219 cttacgagataatgttgtactgcctttaacatgtgcaatatcaaccaatctcaaaacaattagagtaa 286  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50641745 cttaagagataatgttgtactgcctttaacatgtgcaatatcaaccaatctcaaaacaattagagtaa 50641812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 14798457 - 14798534
Alignment:
Q  118 tgctcgtaaatcattccactctcctctcttattgctaacaccttcattccctt-accacaaatgctagaaacatcaag 194  Q
    |||| ||||| ||||||| ||||||||| |||||||| |||| |||| ||||| ||||| |||| |||||||||||||    
T  14798457 tgcttgtaaaccattccattctcctctcatattgctagcaccgtcatacccttgaccacgaatgttagaaacatcaag 14798534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 41271 - 41194
Alignment:
Q  118 tgctcgtaaatcattccactctcctctcttattgctaacaccttcattccctt-accacaaatgctagaaacatcaag 194  Q
    |||| ||||| ||||||| ||||||||| |||||||| |||| |||| ||||| ||||| |||| |||||||||||||    
T  41271 tgcttgtaaaccattccattctcctctcatattgctagcaccgtcatacccttgaccacgaatgttagaaacatcaag 41194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 31420769 - 31420692
Alignment:
Q  118 tgctcgtaaatcattccactctcctctcttattgctaacaccttcattccctt-accacaaatgctagaaacatcaag 194  Q
    |||| ||||| ||||||| ||||||||| |||||||| |||| |||| ||||| ||||| |||| |||||||||||||    
T  31420769 tgcttgtaaaccattccattctcctctcatattgctagcaccgtcatacccttgaccacgaatgttagaaacatcaag 31420692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 96072 - 95995
Alignment:
Q  118 tgctcgtaaatcattccactctcctctcttattgctaacaccttcattccctt-accacaaatgctagaaacatcaag 194  Q
    |||| ||||| ||||||| ||||||||| |||||||| |||| |||| ||||| ||||| |||| |||||||||||||    
T  96072 tgcttgtaaaccattccattctcctctcatattgctagcaccgtcatacccttgaccacgaatgttagaaacatcaag 95995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 194
Target Start/End: Original strand, 22271637 - 22271714
Alignment:
Q  118 tgctcgtaaatcattccactctcctctcttattgctaacaccttcattccctt-accacaaatgctagaaacatcaag 194  Q
    |||| ||||| ||||||| ||||||||| |||||||| |||| |||| ||||| ||||| |||| |||||||||||||    
T  22271637 tgcttgtaaaccattccattctcctctcatattgctagcaccgtcatacccttgaccacgaatgttagaaacatcaag 22271714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 2735400 - 2735323
Alignment:
Q  118 tgctcgtaaatcattccactctcctctcttattgctaacaccttcattccctt-accacaaatgctagaaacatcaag 194  Q
    |||| ||||| ||||||| ||||||||| |||||||| |||| |||| ||||| ||||| |||| |||||||||||||    
T  2735400 tgcttgtaaaccattccattctcctctcatattgctagcaccgtcatacccttgaccacgaatgttagaaacatcaag 2735323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 40924446 - 40924369
Alignment:
Q  118 tgctcgtaaatcattccactctcctctcttattgctaacaccttcattccctt-accacaaatgctagaaacatcaag 194  Q
    |||| ||||| ||||||| ||||||||| |||||||| |||| |||| ||||| ||||| |||| |||||||||||||    
T  40924446 tgcttgtaaaccattccattctcctctcatattgctagcaccgtcatacccttgaccacgaatgttagaaacatcaag 40924369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 130 - 194
Target Start/End: Complemental strand, 5087486 - 5087421
Alignment:
Q  130 attccactctcctctcttattgctaacaccttcattccctt-accacaaatgctagaaacatcaag 194  Q
    |||||| ||||||||| |||||||| |||| |||| ||||| ||||| |||| |||||||||||||    
T  5087486 attccattctcctctcatattgctagcaccatcatacccttgaccacgaatgttagaaacatcaag 5087421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 123 - 194
Target Start/End: Complemental strand, 27132214 - 27132142
Alignment:
Q  123 gtaaatcattccactctcctctcttattgctaacaccttcattccctt-accacaaatgctagaaacatcaag 194  Q
    ||||| ||||||| ||||||||| |||||| | |||| |||| ||||| ||||| |||| |||||||||||||    
T  27132214 gtaaaccattccattctcctctcatattgccagcaccgtcatacccttgaccacgaatgttagaaacatcaag 27132142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University