View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20895_low_7 (Length: 326)
Name: NF20895_low_7
Description: NF20895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20895_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 18 - 316
Target Start/End: Complemental strand, 18219979 - 18219681
Alignment:
| Q |
18 |
aaagttgggactgggaatttgggaggtcaaataacatatagacaacagtagcttttaataatgattttatctgttgaattgcaggatatttatttggagc |
117 |
Q |
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| T |
18219979 |
aaagttgggactgggaatttgggaggtcacatgacatatagacaacagtagcttttaataatgattttatctgttgaattgcaggatatttatttggagc |
18219880 |
T |
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| Q |
118 |
tggttcataaaaaggctaaaattgaagaacagctaaaagaaatttctttggcattgaatggcatggaggtaacatatataaactctttattctattgagt |
217 |
Q |
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| T |
18219879 |
tggttcataaaaaggctaaaattgaagaacagctaaaagaaatttctttggcattgaatggcatggaggtaacatatataaactctttattttattgagt |
18219780 |
T |
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| Q |
218 |
gctcattgattgaatgttttcattgcaaaatcattatgctacctaccttcatcagaatacaataaaataatgatgctaatgattgctttgtgatattct |
316 |
Q |
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| T |
18219779 |
gctcattgattgaatgttttcattgcaaaataattatgctacctaccttcatcagaatacaataaaataatgatgctaatgattgcgttgtaatattct |
18219681 |
T |
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Target: chr7 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 27 - 316
Target Start/End: Complemental strand, 43011797 - 43011507
Alignment:
| Q |
27 |
actgggaatttgggaggtcaaataacatatagacaacagtagcttttaataatgattttatctgttgaattgcaggatatttatttggagctggttcata |
126 |
Q |
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|||||||||||||||||||| || ||||||||||||||||| |||||||||| ||| |||||||| ||| |||||||||||||||||||||||||||| |
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| T |
43011797 |
actgggaatttgggaggtcacatgtcatatagacaacagtagtttttaataattattctatctgttatatttcaggatatttatttggagctggttcata |
43011698 |
T |
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| Q |
127 |
aaaaggctaaaattgaagaacagctaaaagaaatttctttggcattgaatggcatggaggtaacatatataaactctttattctattgag-tgctcattg |
225 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||| |
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| T |
43011697 |
aaaaggctaaaattgaagaacagctaaaagaaatttctttggcattgaatggcatggaggtaacatatataaactctttattttattgagctgcttattg |
43011598 |
T |
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| Q |
226 |
attgaatgttttcattgcaaaatcattatgctacctaccttcatcagaatacaataaaataatgatgctaatgattgctttgtgatattct |
316 |
Q |
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||||||| |||||| |||||||| |||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||| |
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| T |
43011597 |
attgaattttttcaatgcaaaataattatgctacctacattcatcagaatacaataaaataatgatgctgatgattgctttgaaatattct |
43011507 |
T |
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