View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20895_low_8 (Length: 326)
Name: NF20895_low_8
Description: NF20895
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20895_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 314
Target Start/End: Original strand, 31201348 - 31201644
Alignment:
| Q |
18 |
cttccctcatggcaacgtaccgcacgcgactttttaggccacggtactcatactctatcaacagctgggggaaactttgtaccagatgcaagtgtatttg |
117 |
Q |
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| T |
31201348 |
cttccctcatggcaacgtaccgcacgcgactttttaggccacggtactcatactctatcaacagctgggggaaactttgtaccagatgcaagtgtatttg |
31201447 |
T |
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| Q |
118 |
ctattggcaatggtactgtaaaaggtggttcgccaagagctagggttgcaacctacaaagtgtgctggtctctgttagatcttgatgactgctttggtgc |
217 |
Q |
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| T |
31201448 |
ctattggcaatggtactgtaaaaggtggttcgccaagagctagggttgcaacctacaaagtgtgctggtctctgttagatcttgaagactgctttggtgc |
31201547 |
T |
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| Q |
218 |
cgatgtattagctgctattgatcaagccattagtgatggtgttgatataatctcactttcacttgctggccattctcttgtttatcccgaagatatt |
314 |
Q |
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| T |
31201548 |
cgatgtattagctgctattgatcaagccattagtgatggtgttgatataatctcactttcacttgctggccattctcttgtttatcccgaagatatt |
31201644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 17 - 268
Target Start/End: Complemental strand, 31063821 - 31063570
Alignment:
| Q |
17 |
acttccctcatggcaacgtaccgcacgcgactttttaggccacggtactcatactctatcaacagctgggggaaactttgtaccagatgcaagtgtattt |
116 |
Q |
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| T |
31063821 |
acttcccacatcgcagcgtacagcacgtgactttgtaggtcacggtactcatacactatcaacagccggtggaaacttcgtaccaggtgcaagcatattt |
31063722 |
T |
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| Q |
117 |
gctattggcaatggtactgtaaaaggtggttcgccaagagctagggttgcaacctacaaagtgtgctggtctctgttagatcttgatgactgctttggtg |
216 |
Q |
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| T |
31063721 |
aacattggaaatggtaccataaaaggaggttcaccaagagctagagttgcaacctacaaagtgtgctggtctctaacagatgccgctagttgctttggtg |
31063622 |
T |
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| Q |
217 |
ccgatgtattagctgctattgatcaagccattagtgatggtgttgatataat |
268 |
Q |
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| T |
31063621 |
ctgatgtattatctgctattgatcaagcaattgatgatggtgttgacataat |
31063570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 54 - 268
Target Start/End: Complemental strand, 31108871 - 31108657
Alignment:
| Q |
54 |
ggccacggtactcatactctatcaacagctgggggaaactttgtaccagatgcaagtgtatttgctattggcaatggtactgtaaaaggtggttcgccaa |
153 |
Q |
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| T |
31108871 |
ggccatggtactcacacactatcaacagctggtggaaatttcgtaccaggtgcaagcatatttaacattggaaatggtaccataaaaggaggttcaccaa |
31108772 |
T |
|
| Q |
154 |
gagctagggttgcaacctacaaagtgtgctggtctctgttagatcttgatgactgctttggtgccgatgtattagctgctattgatcaagccattagtga |
253 |
Q |
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| T |
31108771 |
gagctagagttgcaacctacaaagtgtgctggtctctaacagatgccactagttgctttggtgctgatgtattatctgctattgatcaagcaattgatga |
31108672 |
T |
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| Q |
254 |
tggtgttgatataat |
268 |
Q |
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||||||||| ||||| |
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| T |
31108671 |
tggtgttgacataat |
31108657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 45 - 244
Target Start/End: Complemental strand, 31146630 - 31146431
Alignment:
| Q |
45 |
gactttttaggccacggtactcatactctatcaacagctgggggaaactttgtaccagatgcaagtgtatttgctattggcaatggtactgtaaaaggtg |
144 |
Q |
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|||||| ||||||| || || || || ||||||||||| || |||||||| |||| | | |||| |||||| ||||||||| ||||| ||||||||| |
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| T |
31146630 |
gactttgtaggccatgggacacacacactatcaacagcaggtggaaacttcgtacaaaacgcaaccatatttggtattggcaacggtaccataaaaggtg |
31146531 |
T |
|
| Q |
145 |
gttcgccaagagctagggttgcaacctacaaagtgtgctggtctctgttagatcttgatgactgctttggtgccgatgtattagctgctattgatcaagc |
244 |
Q |
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| T |
31146530 |
gttcaccaagatcaagagttgcaacctacaaagcatgttggtctctaacagatgttgtagactgctttggtgccgatgtattagctgctattgatcaagc |
31146431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 45 - 244
Target Start/End: Complemental strand, 31164456 - 31164257
Alignment:
| Q |
45 |
gactttttaggccacggtactcatactctatcaacagctgggggaaactttgtaccagatgcaagtgtatttgctattggcaatggtactgtaaaaggtg |
144 |
Q |
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|||||| ||||||| || || || || ||||||||||| || |||||||| |||| | | |||| |||||| ||||||||| ||||| ||||||||| |
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| T |
31164456 |
gactttgtaggccatgggacacacacactatcaacagcaggtggaaacttcgtacaaaacgcaaccatatttggtattggcaacggtaccataaaaggtg |
31164357 |
T |
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| Q |
145 |
gttcgccaagagctagggttgcaacctacaaagtgtgctggtctctgttagatcttgatgactgctttggtgccgatgtattagctgctattgatcaagc |
244 |
Q |
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|||| |||||| | || |||||||||||||||| || |||||||| |||| ||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
31164356 |
gttcaccaagatcaagagttgcaacctacaaagcatgttggtctctaacagatgttgtagactgcttcggtgccgatgtattagctgctattgatcaagc |
31164257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 39 - 189
Target Start/End: Complemental strand, 31051346 - 31051196
Alignment:
| Q |
39 |
gcacgcgactttttaggccacggtactcatactctatcaacagctgggggaaactttgtaccagatgcaagtgtatttgctattggcaatggtactgtaa |
138 |
Q |
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||||| ||||||| ||||| |||||||| || |||||||||||||| |||||||| ||||||| |||||| |||||| ||| ||||||||||| | | |
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| T |
31051346 |
gcacgtgacttttacggccatggtactcacacactatcaacagctggtggaaacttcgtaccaggtgcaagcatatttggtatcggcaatggtaccatta |
31051247 |
T |
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| Q |
139 |
aaggtggttcgccaagagctagggttgcaacctacaaagtgtgctggtctc |
189 |
Q |
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| T |
31051246 |
aaggtggttcaccaaaatcaagagttgtaacctacaaagtgtgttggtctc |
31051196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 212 - 277
Target Start/End: Complemental strand, 31051161 - 31051096
Alignment:
| Q |
212 |
tggtgccgatgtattagctgctattgatcaagccattagtgatggtgttgatataatctcactttc |
277 |
Q |
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|||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||| |||| |
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| T |
31051161 |
tggtgctgatgtattatctgctatcgatcaagccattagtgatggtgttgatataatctcagtttc |
31051096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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