View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20896_high_3 (Length: 417)
Name: NF20896_high_3
Description: NF20896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20896_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 39 - 412
Target Start/End: Complemental strand, 45070821 - 45070447
Alignment:
| Q |
39 |
taaatcacaattaataacacaattctccaaggccaatgatatgcctccatatttccatctacatgatgaggtgcatgggatatataccattggggtccct |
138 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45070821 |
taaatcataattaataacacaattctccaaggccaatgatatgcctccatatttccatctacatgatgaggtgcatgggatatataccattggggtccct |
45070722 |
T |
|
| Q |
139 |
tttactaacagtttatttgtgcttaaaaggaatgtattaactaactatataattgcttattgcaggaaaatggacatttctttcgaaatgtctagcactt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45070721 |
tttactaacagtttatttgtgcttaaaaggaatgtattaactaactatataattgcttattgcaggaaaatggacatttctttcgaaatgtctagcactt |
45070622 |
T |
|
| Q |
239 |
acacacaccacatcaaagtcattttgtgtggtcatgggctaattaaatttaaatgaggataaaacttgcctttcccacacttaggttggattaatcttta |
338 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
45070621 |
acacacaccacatcaaagtcattttgtgtggtcatgggctaattaaatttaaatgaggataaaacttacctttcccacacttaggttggattaatcttta |
45070522 |
T |
|
| Q |
339 |
ctatacaaaactttatac-aaatatctacttggatatctcaattcctgttgattgtttgtatctttcttctcact |
412 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
45070521 |
ctattcaaaactttatacaaaatatctacttggatatctcaattcctgttcattgtttgtatctttcttttcact |
45070447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University