View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20896_high_4 (Length: 376)
Name: NF20896_high_4
Description: NF20896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20896_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 334; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 13 - 358
Target Start/End: Original strand, 47053660 - 47054005
Alignment:
| Q |
13 |
aaaatcacaactgaaacaaagagagaaagggagcaaaggcaaagagacacacgagccaagctggaagagcacacactcttctctaagaagaaactaaacc |
112 |
Q |
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| T |
47053660 |
aaaatcacaactgaaacaaagagagaaagggagcaaaggcaaagagacacacgagccaagctggaagagcacacactcttctctaagaagaaactaaacc |
47053759 |
T |
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| Q |
113 |
ctaatagagcttagggaacttagacgacgctgagttatgaaattctaagtttctaaccaatgttatcttctgagaaacaatcactaagctttctccaaac |
212 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47053760 |
ctaacagagcttagggaacttagacgacgctgagttatgaaattctaagtttctaaccaatgttatcttctgagaaacaatcactaagctttctccaaac |
47053859 |
T |
|
| Q |
213 |
attggcagcttcatcagtctacaaaatgcttgtggcagcgctagctgacatgcaatgaccgactcacaaaagcaccaacaggtttcatcttttccatttg |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47053860 |
attggcagcttcatcagtctacaaaatgcttgtggcagcgctagctgacacgcaatgaccgactcacaaaagcaccaacaggtttcatcttttccatttg |
47053959 |
T |
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| Q |
313 |
tccaaggtagaggcatcatagtaaagttcctaaatagtttatttct |
358 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
47053960 |
tccaaggtagaggcatcatagtaaagttcctaaatagattatttct |
47054005 |
T |
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