View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20896_high_6 (Length: 288)
Name: NF20896_high_6
Description: NF20896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20896_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 208; Significance: 1e-114; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 272
Target Start/End: Original strand, 36397824 - 36398080
Alignment:
| Q |
16 |
tgaacttggtaagatattccctcctactgnnnnnnnncttctaaatttgacaccacttatgtgtagtttaaacttctctggacttgtttcttcttatcag |
115 |
Q |
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| T |
36397824 |
tgaacttggtaagatattccctcctactgttttttttcttctaaatttgacaccacttatgtgtagtttaaacttctctggacttgtttcttcttatcag |
36397923 |
T |
|
| Q |
116 |
ctaattacaacnnnnnnngcaaaggagtccttgataaaaagaggttggctgtaattatggtagtttcaatagttgcaatcgtcattctcctctcttgtgt |
215 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36397924 |
ctaattacaacaaaaaaagcaaaggagtccttgataaaaagaggttggctgtaattatggtagtttcaatagttgcaatcgtcattctcctctcttgtgt |
36398023 |
T |
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| Q |
216 |
gaattacatgtggaagaaaaaaggaaagggtatgtgattgattttttaggatcatat |
272 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
36398024 |
gaattacatgtggaagaaaaaaagaaagggtatgtgattgattttttaggatcatat |
36398080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 57 - 272
Target Start/End: Original strand, 36417451 - 36417668
Alignment:
| Q |
57 |
taaatttgacaccacttat--gtgtagtttaaacttctctggacttgtttcttcttatcagctaattacaacnnnnnnngcaaaggagtccttgataaaa |
154 |
Q |
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| T |
36417451 |
taaatttgacaccacttttaagtgtagtttaaacttctttggacttgttttttcttatcagctaattacaacaaaaaaagcaaaggagtccttgataaaa |
36417550 |
T |
|
| Q |
155 |
agaggttggctgtaattatggtagtttcaatagttgcaatcgtcattctcctctcttgtgtgaattacatgtggaagaaaaaaggaaagggtatgtgatt |
254 |
Q |
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| T |
36417551 |
agaggttagctgcaattcttgtagcttctatagttgcaattgtcatcctcctcttctgtgtgaattacatgtggaagaaaaagagaaagggtatgtgatt |
36417650 |
T |
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| Q |
255 |
gattttttaggatcatat |
272 |
Q |
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||||||| |||| |||| |
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| T |
36417651 |
tattttttgggatgatat |
36417668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 56 - 272
Target Start/End: Original strand, 36426277 - 36426496
Alignment:
| Q |
56 |
ctaaatttgacaccacttatgtgtagtttaaacttctctggacttgtttcttctta---tcagctaattacaacnnnnnnngcaaaggagtccttgataa |
152 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| ||| || ||||||||||||||| || |
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| T |
36426277 |
ctaaatttgacaccacttatgtgtagtttaaacttctttggacttgtttcttcttagcgtcagctaactacgacaaaaaaagcaaaggagtccttggcaa |
36426376 |
T |
|
| Q |
153 |
aaagaggttggctgtaattatggtagtttcaatagttgcaatcgtcattctcctctcttgtgtgaattacatgtggaagaaaaaaggaaagggtatgtga |
252 |
Q |
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||||||||| |||| |||| | |||| ||| ||||||||||| ||||| ||||||| |||||||||||||||||||||||||| |||||||||||| | |
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| T |
36426377 |
aaagaggttagctgcaattcttgtagcttctatagttgcaattgtcatcctcctcttctgtgtgaattacatgtggaagaaaaagagaaagggtatgtaa |
36426476 |
T |
|
| Q |
253 |
ttgattttttaggatcatat |
272 |
Q |
| |
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|| ||||||| |||| |||| |
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| T |
36426477 |
tttattttttgggatgatat |
36426496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 57 - 245
Target Start/End: Original strand, 36412120 - 36412310
Alignment:
| Q |
57 |
taaatttgacaccacttat--gtgtagtttaaacttctctggacttgtttcttcttatcagctaattacaacnnnnnnngcaaaggagtccttgataaaa |
154 |
Q |
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||||||||||||||||| | ||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
36412120 |
taaatttgacaccacttttaagtgtagtttaaacttctttggacttgttttttcttatcagctaattacaacaaaaaaagcaaaggagtccttgataaaa |
36412219 |
T |
|
| Q |
155 |
agaggttggctgtaattatggtagtttcaatagttgcaatcgtcattctcctctcttgtgtgaattacatgtggaagaaaaaaggaaaggg |
245 |
Q |
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| T |
36412220 |
agaggttagctgcaattcttgtagcttctatagttgcaattgtcatcctcctcttctgtgtgaattacatgtggaagaaaaagagaaaggg |
36412310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 53 - 263
Target Start/End: Original strand, 36404796 - 36405006
Alignment:
| Q |
53 |
cttctaaatttgacaccacttatgtgtagtttaaacttctctggacttgtttcttcttatcagctaattacaacnnnnnnngcaaaggagtccttgataa |
152 |
Q |
| |
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||||||||||||||| ||||||||| |||||||||||| | ||||||||| |||| ||||||||||||||||| ||||||||| ||||| || |
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| T |
36404796 |
cttctaaatttgacagcacttatgtatagtttaaacttatttggacttgtatctttatatcagctaattacaacaaaaaaagcaaaggagcacttgacaa |
36404895 |
T |
|
| Q |
153 |
aaagaggttggctgtaattatggtagtttcaatagttgcaatcgtcattctcctctcttgtgtgaattacatgtggaagaaaaaaggaaagggtatgtga |
252 |
Q |
| |
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|||||||||||||| |||| |||||| ||| || |||||||| ||||| |||||||| ||||| ||||||||||||||||||||| |||||||||| || |
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| T |
36404896 |
aaagaggttggctgcaattctggtagcttctattgttgcaattgtcatcctcctctcctgtgtaaattacatgtggaagaaaaaaacaaagggtatgcga |
36404995 |
T |
|
| Q |
253 |
ttgatttttta |
263 |
Q |
| |
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|| ||||||| |
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| T |
36404996 |
tttttttttta |
36405006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 136 - 267
Target Start/End: Original strand, 36388165 - 36388296
Alignment:
| Q |
136 |
aaaggagtccttgataaaaagaggttggctgtaattatggtagtttcaatagttgcaatcgtcattctcctctcttgtgtgaattacatgtggaagaaaa |
235 |
Q |
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|||||||| |||||||||||||||||||||| |||| | |||| ||| ||| ||||||| ||| | |||||||| |||||||| |||||||||||||||| |
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| T |
36388165 |
aaaggagttcttgataaaaagaggttggctgcaattcttgtagcttctataattgcaattgtcctcctcctctcctgtgtgaactacatgtggaagaaaa |
36388264 |
T |
|
| Q |
236 |
aaggaaagggtatgtgattgattttttaggat |
267 |
Q |
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|| | ||||||||||||| |||||||||||| |
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| T |
36388265 |
aaagggagggtatgtgatttattttttaggat |
36388296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 272
Target Start/End: Original strand, 36434194 - 36434335
Alignment:
| Q |
134 |
gcaaaggagtccttgataaaaagaggttggctgtaattatggtagtttcaatagttgca---atcgtcattctcctctcttgtgtgaattacatgtggaa |
230 |
Q |
| |
|
|||| ||||||| | |||| || |||||||||| |||| |||||| ||| |||||||| |||||| | ||||||| |||||| ||| || |||||| |
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| T |
36434194 |
gcaacggagtccctcataagaaaaggttggctgcaattttggtagcttctatagttgctgttatcgtcctcgtcctctcctgtgtgtattgcaagtggaa |
36434293 |
T |
|
| Q |
231 |
gaaaaaaggaaagggtatgtgattgattttttaggatcatat |
272 |
Q |
| |
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||||||| ||||||||||| ||| |||||| ||||| |||| |
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| T |
36434294 |
gaaaaaaacaaagggtatgtaatttatttttaaggatgatat |
36434335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 36412071 - 36412099
Alignment:
| Q |
16 |
tgaacttggtaagatattccctcctactg |
44 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
36412071 |
tgaacttggtaagatattccctcctactg |
36412099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 36417402 - 36417430
Alignment:
| Q |
16 |
tgaacttggtaagatattccctcctactg |
44 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
36417402 |
tgaacttggtaagatattccctcctactg |
36417430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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