View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20896_low_2 (Length: 445)
Name: NF20896_low_2
Description: NF20896
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20896_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 4 - 427
Target Start/End: Original strand, 48001662 - 48002085
Alignment:
| Q |
4 |
atgtcgaagaatataattaattcttcattattttattaggactcgtcacgaaatatcattggaacgaggtggagattctacatgtgatcatggagattat |
103 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48001662 |
atgtcgtacaatataattaattcttcattattttattaggactggtcacgaaatatcattggaacgaggtggagattctacatgtgatcatggagattat |
48001761 |
T |
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| Q |
104 |
gaaaatgttgttgttgaagaaatctctgggacacaagctggtactgtctatagtggcgtaaccaatgtttctgagcttgagatgctgttgggagcatact |
203 |
Q |
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| T |
48001762 |
gaaaatgttgttggtgaagaaatctctgggacacaagctggtactgtctatagtggcgtaaccaatgtttctgagcttgagatgctgttgggagcatact |
48001861 |
T |
|
| Q |
204 |
ttgtgcaaattggaggcacagtcaacaaaatatctgcggtacacaatcttttactccctctatttggtaaaacaattttattggctattactaacactta |
303 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48001862 |
ttgtgcaaattggaggcacagtcaacaaaatatctgcggtacacaatcttttactccctctatttggtaaaacaattttattggctattactaacactta |
48001961 |
T |
|
| Q |
304 |
ttatttgttggattggacggttgaagctgagtgactatgttgaagacacagaggactacataaacattacattggatgataatcagaaccgtattctgca |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48001962 |
ttatttgttggattggacggttgaagctgagtgactatgttgaagacacagaggactacataaacattacattggatgataatcagaaccgtattctgca |
48002061 |
T |
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| Q |
404 |
aactggagttcagataggcacagc |
427 |
Q |
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|||||||||||||||||||||||| |
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| T |
48002062 |
aactggagttcagataggcacagc |
48002085 |
T |
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