View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20897_high_3 (Length: 584)
Name: NF20897_high_3
Description: NF20897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20897_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 544; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 18 - 576
Target Start/End: Complemental strand, 25710182 - 25709621
Alignment:
| Q |
18 |
attgttcactacaaatctcctcgaagtgtatgttgaacaaattgagcttgtctatcaatgactcttgtgtaacacccaactcattgctgtcaaccttgag |
117 |
Q |
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| T |
25710182 |
attgttcactacaaatctcctcgaagtgtatgttgaacaaattgagcttgtctatcaatgactcttgtgtaacacccaactcattgctgtcaaccttgag |
25710083 |
T |
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| Q |
118 |
aaacctgatcaccttactccacgagtttctatgataaagctcaatgtgttgttggatttttgcttggttttctggaaaccaatcatcaccgatatagaag |
217 |
Q |
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| T |
25710082 |
aaacctgatcaccttactccacgagtttctatgataaagctcaatgtgttgttggatttttgcttggttttctggaaaccaatcatcaccgatatagaag |
25709983 |
T |
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| Q |
218 |
ctagaattccagtgtatcttatgtaacatttgttctatgcgtttcctattattcatcatgaaaagatgctgcatagcagggtacttgtagtttttagact |
317 |
Q |
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| T |
25709982 |
ctagaattccagtgtatcttatttaacatttgttctatgcgtttcctattattcatcatgaaaagatgctgcatagcagggtacttgtagtttttagact |
25709883 |
T |
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| Q |
318 |
tagctatcaattctgtctctaacagtgctatcatccttttaatctgcgctgtaaatgaacaagaagttgtcacttcagaagcaacaaccttggggtattt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25709882 |
tagctatcaattctgtctctaacagtgctatcatccttttaatctgcgctgtaaatgaacaagaagttgtcacttcagaagcaacaaccttggggtattt |
25709783 |
T |
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| Q |
418 |
tgataaaatttcctccagcatcttctgtgagcaatgaatagaatcgaggtagtctgtgacatggtctgtgattggatgatagaggccatat---ggagaa |
514 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
25709782 |
tgataaaatttcctccagcatcttctgtgagcaatgaatagaatcgaggtagtctgtgacatggtctgtgattggatgatagaggccatatgccggagaa |
25709683 |
T |
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| Q |
515 |
acttgcttcgctattgggacataaaaagttagattatccaattccatgaaaaggtctctgct |
576 |
Q |
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| T |
25709682 |
acttgcttcgctattgggacataaaaagttagattatccaattccatgaaaaggtctctgct |
25709621 |
T |
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