View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20897_high_6 (Length: 481)
Name: NF20897_high_6
Description: NF20897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20897_high_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 260; Significance: 1e-145; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 155 - 471
Target Start/End: Complemental strand, 32680945 - 32680626
Alignment:
| Q |
155 |
gagggcttctttaaggatctatagtaagggctccttagatgttttgtgttttaaggtacaaaacaaaattggaatgttgtcatatgatacagtttattta |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32680945 |
gagggcttctttaaggatctatagtaagggctccttagatgttttgtgttttaaagtacaaaacaaaattggaatgttgtcatatgatacaatttattta |
32680846 |
T |
|
| Q |
255 |
tctatctattgaataacataccaattaagtatttcgttggataaatgatggta-tatt----actcactcattggcatttttattctgatttcatatatt |
349 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||| ||||||||||||||||||||| | |
|
|
| T |
32680845 |
tctatctattgaataacataccaattaagtatttcgttggataaatgatagtattattactcactcactcattgtcatttttattctgatttcata---t |
32680749 |
T |
|
| Q |
350 |
atttatacccgttactatgtacccctataaatataatcacaaactttttgacctgttctagttctagtggtaataccaatatatatttcaa-gtttgaca |
448 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
32680748 |
atttatacccgttactatgtacccctataaatataatcacaaactttttgacctgttctagttctagtggtaataccaatatatatttcaaggtttgaca |
32680649 |
T |
|
| Q |
449 |
atttgctcttaaatgaccctatg |
471 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
32680648 |
atttgctcttaaatgaccctatg |
32680626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 18 - 109
Target Start/End: Complemental strand, 32681087 - 32680992
Alignment:
| Q |
18 |
aattgtacccatctcgagtcaacttcccact----agtaaattgtgagtcatatccaagagtttctaactatattggtagttgtacagtactattc |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32681087 |
aattgtacccatctcgagtcaacttcccacttattagtaaattgtgagtcatatccaagagtttctaactatattggtagttgtacagtgctattc |
32680992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University