View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20897_high_8 (Length: 421)
Name: NF20897_high_8
Description: NF20897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20897_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 20 - 407
Target Start/End: Original strand, 30897388 - 30897785
Alignment:
| Q |
20 |
tacatggttcaatacaagaatcttttgcttgaggacaagtctggacctcttgtagagaccatttatc-atatgagctacgtccaacaccaccacgtgttc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30897388 |
tacatggttcaatacaagaatcttttgcttgaggacaagtctggacctcttgtagagaccatttatccatatgagctacgtccaacaccaccacgtgttc |
30897487 |
T |
|
| Q |
119 |
gtaatcctcatgaatttcaactcaatcagaaagttgatgctttccataatgatggttggtgggtagggcaaatcaccagtgagaagatcatcactgctga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30897488 |
gtaatcctcatgaatttcaactcaatcagaaagttgatgctttccataatgatggttggtgggtagggcaaatcaccagtgagaagatcatcactgctga |
30897587 |
T |
|
| Q |
219 |
agagggccattgctattgggtgtatttcaccactagctcagagacgaattactaccgctatgatcagatcagagttcatcatgagtggtttggtggagag |
318 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30897588 |
agagggccattgctattgggtgtatttcagcactagctcagagacgaattactaccgctatgatcagatcagagttcatcatgagtggtttggtggagag |
30897687 |
T |
|
| Q |
319 |
tggatcttggatg---------cataattcatgattataaacattgctcttgttttatgtattttgaattggttattggcaataaacttcagtctctt |
407 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30897688 |
tggatcttggatgcataattgtcataattcatgattataaacattggtcttgttttatgtattttgaattggttattggcaataaacttcagtctctt |
30897785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 109 - 191
Target Start/End: Complemental strand, 30962987 - 30962905
Alignment:
| Q |
109 |
ccacgtgttcgtaatcctcatgaatttcaactcaatcagaaagttgatgctttccataatgatggttggtgggtagggcaaat |
191 |
Q |
| |
|
||||||||||| |||||| | | |||||||||||||| |||||||||| ||| |||| |||||||||||||||||| |||| |
|
|
| T |
30962987 |
ccacgtgttcgaaatccttctaagtttcaactcaatcaaaaagttgatgttttttataaagatggttggtgggtagggaaaat |
30962905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 5e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 86 - 212
Target Start/End: Complemental strand, 5963602 - 5963476
Alignment:
| Q |
86 |
catatgagctacgtccaacaccaccacgtgttcgtaatcctcatgaatttcaactcaatcagaaagttgatgctttccataatgatggttggtgggtagg |
185 |
Q |
| |
|
|||||||||| |||||| ||| ||||||||||||| ||||| ||| |||||||||||||| |||||||||||||| | || |||||||||||| |||| |
|
|
| T |
5963602 |
catatgagcttcgtccattaccgccacgtgttcgtagtcctcgtgagtttcaactcaatcaaaaagttgatgcttttgacaacgatggttggtggttagg |
5963503 |
T |
|
| Q |
186 |
gcaaatcaccagtgagaagatcatcac |
212 |
Q |
| |
|
||||||||| ||||||||||||||||| |
|
|
| T |
5963502 |
gcaaatcactagtgagaagatcatcac |
5963476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 97 - 207
Target Start/End: Original strand, 38782652 - 38782762
Alignment:
| Q |
97 |
cgtccaacaccaccacgtgttcgtaatcctcatgaa-tttcaactcaatcagaaagttgatgctttccataatgatggttggtgggtagggcaaatcacc |
195 |
Q |
| |
|
||||||| |||||||| ||||||||||||| |||| ||| |||||||||| |||||||||| || |||| ||||||||||||||||| ||||| | |
|
|
| T |
38782652 |
cgtccaataccaccacatgttcgtaatcctt-tgaagtttaaactcaatcaaaaagttgatgtatttgataacgatggttggtgggtaggtaaaatcgct |
38782750 |
T |
|
| Q |
196 |
agtgagaagatc |
207 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
38782751 |
agcgagaagatc |
38782762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 137 - 207
Target Start/End: Original strand, 38788864 - 38788934
Alignment:
| Q |
137 |
aactcaatcagaaagttgatgctttccataatgatggttggtgggtagggcaaatcaccagtgagaagatc |
207 |
Q |
| |
|
||||||||||||||||||||| || |||| |||||||||||||||||| ||||| | || ||||||||| |
|
|
| T |
38788864 |
aactcaatcagaaagttgatgtgtttgataacgatggttggtgggtaggggaaatcgctagcgagaagatc |
38788934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University