View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20897_low_1 (Length: 1226)
Name: NF20897_low_1
Description: NF20897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20897_low_1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 1004; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 1004; E-Value: 0
Query Start/End: Original strand, 17 - 1218
Target Start/End: Original strand, 43018728 - 43019924
Alignment:
| Q |
17 |
cctggttgaatagagtttacaattgatatatatatacattccaatagagagtttacaacttagatttttaggaatttaatttgtagaggttaaacaaacg |
116 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
43018728 |
cctggttgaatatagtttacaattgatatatatatacattccaatagagagtttacaacttagatttttaggaatttaatttgtagaggttaaacaaacg |
43018827 |
T |
|
| Q |
117 |
tcccttaaagttatatgcaatgtcatacgctatactttccttcatatgagagttagtatggtggaagtgaggtcagaagaaattatgcaacttcttgtaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
43018828 |
tcccttaaagttatatgcaatgtcatacgctatactttccttcatatgagagttagtatggtggaagagaggtcagaagaaattatgcaacttcttgtaa |
43018927 |
T |
|
| Q |
217 |
agggtgtgagttttggtctcatcttaaggtgaatgtattctcttgacaacagcttcacgaaaggattttgactcgacataatctctttttaggagtgtta |
316 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43018928 |
agggtgtgagttttgatctcatctcaaggtgaatgtattctcttgacaacagcttcacgaaaggattttgactcgacataatctctttttaggagtgtta |
43019027 |
T |
|
| Q |
317 |
tagttgactctgatggtattttttgtaatgagcttgtaaagtcaatttatctcctttttgttagatgtccttttttatgtcaggttttgtatcatgtata |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
43019028 |
tagttgactctgatggtattttttgtaatgagcttgtaaagtcaatttatctcctttttgttagatgtccttttttatgtcagattttgtatcatgtata |
43019127 |
T |
|
| Q |
417 |
ttatnnnnnnnnnnnncttgaatattccaacacagcatatttattagtttccaccagnnnnnnnntattcactagcctaatactctacctctggtatgat |
516 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
43019128 |
ttat---aaaaaaaaacttgaatattccaacacagcatatttattagtttccaccag-aaaaatatattcactagcctaatactctacctctggtatgat |
43019223 |
T |
|
| Q |
517 |
tgtgctaaataatgatctcaaataaatgatatgataaattaatctaaaggattttaatcgttgtttacgtggttcaccgacaaaggacttattaaatacc |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43019224 |
tgtgctaaataatgatctcaaataaatgatatgataaattaatctaaaggattttaatcgttgtttacgtggttcaccgacaaaggacttattaaatacc |
43019323 |
T |
|
| Q |
617 |
tcaccatatatagaattcaccattttaaaactattatctnnnnnnnnnnnnnnnnnnngttttgtaccgagtctgaactctaaactactaatttaagcta |
716 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43019324 |
tcaccatatatagaattcaccattttaaaactattatct-aaaaaaataaaaaaataagttttgtaccgagtctgaactctaaactactaatttaagcta |
43019422 |
T |
|
| Q |
717 |
gacttagaagttttatttttaaaaatttctcttcaaattttagataggttgattcaattatgcatataatttacatattcttgtaaaatttaaatcataa |
816 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43019423 |
gacttagaagttttatttttaaaaatttctcttcaaattttagataggttgattcaattatgcatataatttacatattcttgtaaaatttaaatcataa |
43019522 |
T |
|
| Q |
817 |
aatatgaaggagtgaaggacagaaatagaaaaaggaagagacgaatttgaatttaaaaaagtaaactttcattgaattgaagaaacgtaaaattacaatg |
916 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43019523 |
aatatgaaggagtgaaggacagaaatagaaaaaggaagagacgaatttgaatttaaaaaagtaaactttcattgaattgaagaaacgtaaaattacaatg |
43019622 |
T |
|
| Q |
917 |
tcgattgtacttnnnnnnnnnnnnnncaaattacagtggcaaaataattgaaatatgccatcaaatcaaatttccctaaaaatccttccaacggtacagt |
1016 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43019623 |
tcgattgtacttaaaaaaaagaaaaacaaattacagtggcaaaataattgaaatatgccatcaaatcaaatttccctaaaaatccttccaacggtacagt |
43019722 |
T |
|
| Q |
1017 |
tgttgttcttcgcctatgctgccaccaactcatacctcggccgtctccttttgaaatgtcgatcatcgtcattgctgtcttcattttttctcacttcgta |
1116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
43019723 |
tgttgttcttcgcctatgctgccaccaactcatacctcggccgtctccttttgaaatgtcgatcatcgtcattgttgtcttcattttttctcacttcgta |
43019822 |
T |
|
| Q |
1117 |
ataaccgtttgatgttgcggaagaacgtggtcgtttgcattcgagtttgcatgaacgtggtggctcttcttgcataggtcgttgacggtggtgttgatga |
1216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43019823 |
ataaccgtttgatgttgcggaagaacgtggtcgtttgcattcgagtttgcatgaacgtggtggctcttcttgcataggtcgttgacggtggtgttgatga |
43019922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 746 - 1133
Target Start/End: Original strand, 35058098 - 35058482
Alignment:
| Q |
746 |
tcttcaaattttagataggttgattcaattatgcatataatttacatattcttgtaaaatttaaatcataaaatatgaaggagtgaaggacagaaataga |
845 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||| ||| ||||||||||||| |
|
|
| T |
35058098 |
tcttcaaattttagataggttgattgaataatgcatataatttatatattcttgtaaaatttaaatcataaattatgaaggactgatggacagaaataga |
35058197 |
T |
|
| Q |
846 |
aaaaggaagagacgaatttgaatttaaaaaagtaaac-tttcattgaattgaagaaacgtaaaattacaatgtcgattgtacttnnnnnnnnnnnnnnca |
944 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||| |||||||||||||||||||| ||| || |
|
|
| T |
35058198 |
aaaaggaagagacgaatttgaattaaaaaaagttaacttttcattgaattgaagaaacataaaattacaatgtcgattgaact----ccaaaaaaaaaca |
35058293 |
T |
|
| Q |
945 |
aattacagtggcaaaataattgaaatatgccatcaaatcaaatttccctaaaaatccttccaacggtacagttgttgt---tcttcgcctatgctgccac |
1041 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||| |||||||| |||| |
|
|
| T |
35058294 |
aattacattggcaaaataattgaaatatgccatcaaataaaatttccctaaaaatccttccaacggtaaagttgttgttgctcttcacctatgcttccac |
35058393 |
T |
|
| Q |
1042 |
caactcatacctcggccgtctccttttgaaatgtcgatcatcgtcattgctgtcttcattttttctcacttcgtaataaccgtttgatgttg |
1133 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
35058394 |
caactcatacctcggccgtctccttttgaaatgtcgatcatcgtc---tctgtcttcgttttttctcacttcgtaataacagtttgatgttg |
35058482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 9e-24
Query Start/End: Original strand, 833 - 925
Target Start/End: Original strand, 42807576 - 42807670
Alignment:
| Q |
833 |
ggacagaaatagaaaaaggaa---gagacgaatttgaatttaaaaaagtaaactttcattgaattgaagaaacgtaaaattacaatgtcgattgta |
925 |
Q |
| |
|
|||||||| |||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
42807576 |
ggacagaagtagaaaaaggaataggagacgaatttgaatt-aaaaaagtagactttcattgaattgaacaaacataaaattacaatgtcgattgta |
42807670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 943 - 987
Target Start/End: Original strand, 42807682 - 42807726
Alignment:
| Q |
943 |
caaattacagtggcaaaataattgaaatatgccatcaaatcaaat |
987 |
Q |
| |
|
||||||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
42807682 |
caaattacattggcaaaataattgaattatgccatcaaatcaaat |
42807726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 1044 - 1083
Target Start/End: Original strand, 42807763 - 42807802
Alignment:
| Q |
1044 |
actcatacctcggccgtctccttttgaaatgtcgatcatc |
1083 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
42807763 |
actcatacctcgaccgtctccttttgaaatgtcgatcatc |
42807802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 1099 - 1136
Target Start/End: Original strand, 42807839 - 42807876
Alignment:
| Q |
1099 |
attttttctcacttcgtaataaccgtttgatgttgcgg |
1136 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
42807839 |
atttcttctcacttcgtaataaccgtttgatgttgcgg |
42807876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1168 - 1197
Target Start/End: Original strand, 35058499 - 35058528
Alignment:
| Q |
1168 |
tgaacgtggtggctcttcttgcataggtcg |
1197 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
35058499 |
tgaacgtggtggctcttcttgcataggtcg |
35058528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 323
Target Start/End: Complemental strand, 30599978 - 30599806
Alignment:
| Q |
153 |
ttccttcatatgagagttagtatggtggaagtgaggtcagaagaaattatgcaacttcttgtaaagggtgtgag--ttttggtctcatcttaaggtgaat |
250 |
Q |
| |
|
|||||||| |||||||||||| ||||||| |||||| || ||||| |||||||| ||| || ||||||||| | || |||||||| ||||||||| |
|
|
| T |
30599978 |
ttccttcacatgagagttagtgtggtggacaaaaggtcataaaaaattgtgcaacttattgcaa-gggtgtgagaatcttcatctcatctcaaggtgaat |
30599880 |
T |
|
| Q |
251 |
gtattctcttgacaacagcttcacgaaaggattttgactcgacataatctctttt-taggagtgttatagttga |
323 |
Q |
| |
|
|| ||||| || |||| |||||| | | |||| ||||||| ||||||||||||| ||||| ||||||||||| |
|
|
| T |
30599879 |
gttttctcatgtcaactgcttcagaatatgattgtgactcggcataatctcttttgaaggagagttatagttga |
30599806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 266
Target Start/End: Original strand, 6035211 - 6035325
Alignment:
| Q |
153 |
ttccttcatatgagagttagtatggtggaagtgaggtcagaagaaattatgcaacttcttgtaaagg-gtgtgagttttggtctcatcttaaggtgaatg |
251 |
Q |
| |
|
|||||| ||| ||||| |||| |||||| |||||||||| ||||||||||| |||||| ||||| || |||| |||||||| ||| |||||||| | |
|
|
| T |
6035211 |
ttcctttataagagagctagtgaggtggatatgaggtcagatgaaattatgcagcttctttcaaaggtttgggagtcttggtctcttctcaaggtgaaag |
6035310 |
T |
|
| Q |
252 |
tattctcttgacaac |
266 |
Q |
| |
|
| |||||||| |||| |
|
|
| T |
6035311 |
ttttctcttggcaac |
6035325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000005
Query Start/End: Original strand, 146 - 212
Target Start/End: Original strand, 12759899 - 12759965
Alignment:
| Q |
146 |
ctatactttccttcatatgagagttagtatggtggaagtgaggtcagaagaaattatgcaacttctt |
212 |
Q |
| |
|
||||| ||||||| ||||||||| |||| ||||||| | |||||||||||||||| ||| ||||||| |
|
|
| T |
12759899 |
ctataatttccttaatatgagagctagtgtggtggatgagaggtcagaagaaattgtgcgacttctt |
12759965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 342
Target Start/End: Original strand, 13956593 - 13956784
Alignment:
| Q |
153 |
ttccttcatatgagagttagtatggtggaagtgaggtcagaagaaattatgcaacttcttgtaa-agggtgtgagttttggtctcatcttaaggtgaatg |
251 |
Q |
| |
|
||||||||||| |||| |||| ||| ||| |||| |||||||||| || |||| ||||||| || || ||| |||| ||||||| || |||||||||| |
|
|
| T |
13956593 |
ttccttcatataagagctagtgtgggggatgtgaagtcagaagaatttgtgcagcttcttgcaagagtgtgagagtcgtggtctcctcgcaaggtgaatg |
13956692 |
T |
|
| Q |
252 |
tattctcttgacaacagcttcacgaaaggattttgactcgacataatctctttt-taggagtgttatagttgactctgatggtattttttgt |
342 |
Q |
| |
|
| |||||||| || | | |||| || | |||| |||||| || |||||||||| ||||| |||||||||| ||| |||||||| |||| |
|
|
| T |
13956693 |
ttttctcttgccagctgattcaggatacgattccgactcgccagaatctcttttcaaggagaattatagttgatcctggtggtatttcttgt |
13956784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 371 - 409
Target Start/End: Original strand, 13005720 - 13005758
Alignment:
| Q |
371 |
tttttgttagatgtccttttttatgtcaggttttgtatc |
409 |
Q |
| |
|
||||||||||||||||||||||| ||||||||| ||||| |
|
|
| T |
13005720 |
tttttgttagatgtccttttttaagtcaggtttggtatc |
13005758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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