View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20897_low_11 (Length: 336)
Name: NF20897_low_11
Description: NF20897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20897_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 10 - 318
Target Start/End: Complemental strand, 13135918 - 13135612
Alignment:
| Q |
10 |
ataattctcaaaatacaaataagaaacaaaaaagtgtagacaatgtaattgaaatgagtcattctctccttctcctaagcatatataataagtaaatcta |
109 |
Q |
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| T |
13135918 |
ataaatctcaaaatacaaataagaaacaaaaaagtctagacaatgtaattgaaatgagtcattctctccttctcctaagcatatataa---gtaaatcta |
13135822 |
T |
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| Q |
110 |
ataatacctccgatgattttttataaaagacatatgaatcaacaaaacaaaa-ttgatgtatttaattaaaaatataaatcaaatacataaacttttgta |
208 |
Q |
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| T |
13135821 |
ataatacctccgatgattttttataaaagacatatgaatcaacaaaacaaaaattgatgtatttaattaaaaatataaatcaaatacataaacttttgta |
13135722 |
T |
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| Q |
209 |
gtgatccatattctctaataaaaataacaagatgttgtagcatttacatagttatatgaacatgatcctagaaagggagagtctctataatagatctctt |
308 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13135721 |
gtgatccatattctcttataaaaataacaagatgttgtagcatttacatagttatatgaacatgatcctagaaagggagagtctctataatagatctctt |
13135622 |
T |
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| Q |
309 |
tggcattaag |
318 |
Q |
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|||||||||| |
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| T |
13135621 |
tggcattaag |
13135612 |
T |
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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 314
Target Start/End: Complemental strand, 55209173 - 55209127
Alignment:
| Q |
268 |
acatgatcctagaaagggagagtctctataatagatctctttggcat |
314 |
Q |
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||||||||||||| | ||||||||||||| |||||||||||||||| |
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| T |
55209173 |
acatgatcctagagaaagagagtctctatagtagatctctttggcat |
55209127 |
T |
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