View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20897_low_12 (Length: 260)
Name: NF20897_low_12
Description: NF20897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20897_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 40103867 - 40103666
Alignment:
| Q |
18 |
tgtggtcaatcaagcttttgaaattgaattgatcaacttgttgctgaaatcccaaagtttctttgctaagagtttattttttgcatatgcacttggcttg |
117 |
Q |
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| T |
40103867 |
tgtggtcaatcaagcttttgaaattgaattgatcaacttgttgctgaaatcccaaagtttctttgctaagagtttattttttgcatatgcacttggcttg |
40103768 |
T |
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| Q |
118 |
aattcattgcaatccacaaagtacttcccagttacaccttttacacttgggtggagtgcaacataacatgtcgtggcagctccctgcaaattaaaagcac |
217 |
Q |
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| T |
40103767 |
aattcattgcaatccacaaagtacttcccagttacaccttttacacttgggtggagtgcaacataacatgtcgtggcagctccctgcaaattaaaagcac |
40103668 |
T |
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| Q |
218 |
cc |
219 |
Q |
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| T |
40103667 |
cc |
40103666 |
T |
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Back To:
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Target: chr1 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 25 - 206
Target Start/End: Original strand, 29517032 - 29517213
Alignment:
| Q |
25 |
aatcaagcttttgaaattgaattgatcaacttgttgctgaaatcccaaagtttctttgctaagagtttattttttgcatatgcacttggcttgaattcat |
124 |
Q |
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||||||| ||||||||||||||||||||||||||||| |||||||||||||| || |||| ||| |||| ||| | |||||||| | || |||| |
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| T |
29517032 |
aatcaagactttgaaattgaattgatcaacttgttgctaaaatcccaaagttttcttcctaatagtccatttgacgcaaaagcacttggttgaaactcat |
29517131 |
T |
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| Q |
125 |
tgcaatccacaaagtacttcccagttacaccttttacacttgggtggagtgcaacataacatgtcgtggcagctccctgcaa |
206 |
Q |
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| T |
29517132 |
tacaatccaaaaagtacttcccagttactcctttcaagcttggatgaagagcaacatagcatgttgttgcagctccctgcaa |
29517213 |
T |
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