View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20897_low_14 (Length: 241)
Name: NF20897_low_14
Description: NF20897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20897_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 30897364 - 30897152
Alignment:
| Q |
1 |
caactctggctttgtagtacgaaccgaaaaacccctcttctctactgcatacttctactttatctcctattttgtaatacactctcctcattggtggacg |
100 |
Q |
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| T |
30897364 |
caactctggctttgtagtacgaaccgaaaaacccctcttctttactgcatacttctactttatctcctattttgtaatccactctcctcattggtggacg |
30897265 |
T |
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| Q |
101 |
catggtggaacaatgtcaagaatctactctacacgaagaaatcttgagagggatggatggaagttctttttatttttgtgttttaagtaacacacacctt |
200 |
Q |
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| T |
30897264 |
catggtggaacaatgtcaagaatctac-----acgaagaaatcttgagagggatgga----aattgtttttatttgtgtgtttcaagtaacacacacctt |
30897174 |
T |
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| Q |
201 |
gtgttgttatatagtcgaggag |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
30897173 |
gtgttgttatatagtcgaggag |
30897152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 29 - 106
Target Start/End: Original strand, 30963129 - 30963206
Alignment:
| Q |
29 |
aaacccctcttctctactgcatacttctactttatctcctattttgtaatacactctcctcattggtggacgcatggt |
106 |
Q |
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| T |
30963129 |
aaacccttcttctttactacatacttctactttatctcctaccttgtaatccactctcttcattggtggacgcatggt |
30963206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 126
Target Start/End: Original strand, 38743700 - 38743810
Alignment:
| Q |
16 |
agtacgaaccgaaaaacccctcttctctactgcatacttctactttatctcctattttgtaatacactctcctcattggtggacgcatggtggaacaatg |
115 |
Q |
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| T |
38743700 |
agtatgaacctacaaacccttcttctttgctgcatacttctactttatctcctaccttgtaatcaactctcttcaccggtggacgcatggttgcacaaga |
38743799 |
T |
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| Q |
116 |
tcaagaatcta |
126 |
Q |
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| T |
38743800 |
tcaagaatcta |
38743810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 38788707 - 38788617
Alignment:
| Q |
16 |
agtacgaaccgaaaaacccctcttctctactgcatacttctactttatctcctattttgtaatacactctcctcattggtggacgcatggt |
106 |
Q |
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|||||||||| | |||||| |||||| | ||||||||||| ||||||||||||| ||||||| |||||| ||| |||||||||||||| |
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| T |
38788707 |
agtacgaacctacaaacccttcttctttgctgcatacttcaactttatctcctaccttgtaatcaactctcttcaccggtggacgcatggt |
38788617 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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