View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20897_low_16 (Length: 212)
Name: NF20897_low_16
Description: NF20897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20897_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 7e-82; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 14775269 - 14775450
Alignment:
| Q |
15 |
caaaggtggaatcaaattatcagtaagcttgatatcatcattatatccaaacttcctgagcacggtccatgttttctcacgggggattttttctaagaag |
114 |
Q |
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| T |
14775269 |
caaaggtggaatcaaattatcagcaagcttgatatcatcattatatccaaacttcctgagcacggtccatgttttctcacggggcattttttctaagaag |
14775368 |
T |
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| Q |
115 |
agggcatgaagatatataaatcctgccaaagaaagtcctcgctcattcacaccttcaggcaa-ttttttcgcacaaccttct |
195 |
Q |
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| T |
14775369 |
agggcgtgaagagatataaatcctgccaaagaaagtccccgctcattcacaccttcaggcaatttttttcgcacaaccttct |
14775450 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 17882642 - 17882823
Alignment:
| Q |
15 |
caaaggtggaatcaaattatcagtaagcttgatatcatcattatatccaaacttcctgagcacggtccatgttttctcacgggggattttttctaagaag |
114 |
Q |
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| T |
17882642 |
caaaggtggaattaaatcatcagcaagcttgatatcatcattatatccaaacctcctgagcacagtccatgttgtctcaagaggccctttttctatgaaa |
17882741 |
T |
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| Q |
115 |
agggcatgaagatatataaatcctgccaaagaaagtcctcgctcattcacaccttcaggcaatt-ttttcgcacaaccttct |
195 |
Q |
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| T |
17882742 |
aggacatgaagaaatagaaaccctgtcaaagtaattcctcgttcattcacaccttcagacaattctttttgcacaaccttct |
17882823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 15 - 195
Target Start/End: Original strand, 15050105 - 15050286
Alignment:
| Q |
15 |
caaaggtggaatcaaattatcagtaagcttgatatcatcattatatccaaacttcctgagcacggtccatgttttctcacgggggattttttctaagaag |
114 |
Q |
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||||||||||| |||| ||||| |||||||||||||| ||||||||||||||||||||| |||||||||||| |||| | || ||||| | ||| |
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| T |
15050105 |
caaaggtggaaataaatcatcagaaagcttgatatcataattatatccaaacttcctgagtacggtccatgttgcctcaggaggccccttttccatgaaa |
15050204 |
T |
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| Q |
115 |
agggcatgaagatatataaatcctgccaaagaaagtcctcgctcattcacaccttcaggc-aattttttcgcacaaccttct |
195 |
Q |
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| T |
15050205 |
agggtatgaagatatagaaatcatgtcaaggtaagttctcgttcattcacaccttcagacaaatttgtttgcacaaccttct |
15050286 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 39 - 170
Target Start/End: Original strand, 15017360 - 15017491
Alignment:
| Q |
39 |
aagcttgatatcatcattatatccaaacttcctgagcacggtccatgttttctcacgggggattttttctaagaagagggcatgaagatatataaatcct |
138 |
Q |
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| T |
15017360 |
aagcttgacatcataattatatccaaacttttttagcacagtccatgttgcctcaagaggccctttttctatgaaaagggcatgaagaaatagaaatcct |
15017459 |
T |
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| Q |
139 |
gccaaagaaagtcctcgctcattcacaccttc |
170 |
Q |
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| T |
15017460 |
gttgaagtaagtcctcgttcattcacgccttc |
15017491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 5e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 33 - 195
Target Start/End: Complemental strand, 36874454 - 36874291
Alignment:
| Q |
33 |
atcagtaagcttgatatcatcattatatccaaacttcctgagcacggtccatgttttctcacgggggattttttctaagaagagggcatgaagatatata |
132 |
Q |
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||||| ||||||||| |||||||||||||| ||||| |||||||| |||||||| ||||| | | |||||||| ||| |||||||||||| ||| | |
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| T |
36874454 |
atcagcaagcttgatttcatcattatatccgaactttctgagcacagtccatgtagtctcaagacgccctttttctatgaaaagggcatgaagaaataga |
36874355 |
T |
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| Q |
133 |
aatcctgccaaagaaagtcctcgctcattcacaccttcaggcaattt-tttcgcacaaccttct |
195 |
Q |
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| T |
36874354 |
aatcccgtcaaagtaagtcctcgttcgttaacaccttcagacaatttatcttgcacaaccttct |
36874291 |
T |
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