View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20897_low_2 (Length: 813)

Name: NF20897_low_2
Description: NF20897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20897_low_2
NF20897_low_2
[»] chr2 (8 HSPs)
chr2 (320-685)||(13432017-13432394)
chr2 (132-299)||(13434892-13435059)
chr2 (130-290)||(20588276-20588436)
chr2 (137-203)||(20587208-20587274)
chr2 (19-76)||(20588168-20588225)
chr2 (29-79)||(20587326-20587376)
chr2 (751-782)||(13431919-13431950)
chr2 (29-79)||(13435112-13435163)
[»] scaffold0524 (4 HSPs)
scaffold0524 (130-290)||(8886-9046)
scaffold0524 (130-198)||(7852-7920)
scaffold0524 (29-79)||(7965-8015)
scaffold0524 (35-76)||(8797-8838)
[»] scaffold0472 (4 HSPs)
scaffold0472 (130-290)||(9102-9262)
scaffold0472 (130-287)||(10263-10420)
scaffold0472 (19-76)||(9319-9376)
scaffold0472 (29-79)||(10168-10218)
[»] chr1 (5 HSPs)
chr1 (130-290)||(46651443-46651603)
chr1 (130-290)||(46652598-46652758)
chr1 (19-76)||(46651654-46651711)
chr1 (29-79)||(46652503-46652553)
chr1 (18-59)||(46604766-46604807)
[»] chr8 (7 HSPs)
chr8 (135-290)||(35506750-35506905)
chr8 (19-76)||(35505819-35505876)
chr8 (141-203)||(35505691-35505753)
chr8 (226-288)||(35750203-35750265)
chr8 (18-59)||(45448180-45448221)
chr8 (29-79)||(35506652-35506702)
chr8 (137-198)||(35750693-35750753)
[»] chr5 (7 HSPs)
chr5 (130-290)||(42775502-42775662)
chr5 (130-299)||(37986316-37986485)
chr5 (130-203)||(42776635-42776708)
chr5 (18-67)||(33738061-33738110)
chr5 (29-79)||(42775707-42775757)
chr5 (20-57)||(12890565-12890602)
chr5 (35-76)||(42776543-42776584)
[»] chr4 (11 HSPs)
chr4 (138-290)||(39929179-39929331)
chr4 (138-256)||(39928049-39928167)
chr4 (138-203)||(46253144-46253209)
chr4 (135-198)||(5236409-5236472)
chr4 (25-79)||(5236520-5236574)
chr4 (19-76)||(39928227-39928284)
chr4 (130-177)||(5236904-5236951)
chr4 (29-79)||(39929076-39929126)
chr4 (37-79)||(46253263-46253305)
chr4 (20-65)||(4241359-4241404)
chr4 (18-59)||(33609032-33609073)
[»] chr7 (13 HSPs)
chr7 (138-256)||(43545458-43545576)
chr7 (130-203)||(25008251-25008324)
chr7 (130-203)||(28848723-28848796)
chr7 (130-203)||(28849795-28849868)
chr7 (130-290)||(25009302-25009462)
chr7 (130-203)||(43546547-43546620)
chr7 (29-79)||(28848841-28848891)
chr7 (29-79)||(25008370-25008420)
chr7 (19-57)||(28849683-28849721)
chr7 (29-79)||(43546452-43546502)
chr7 (18-59)||(11670176-11670217)
chr7 (35-76)||(25009207-25009248)
chr7 (35-76)||(43545638-43545679)
[»] chr3 (9 HSPs)
chr3 (130-203)||(8391560-8391633)
chr3 (130-203)||(45982626-45982699)
chr3 (130-290)||(8392620-8392780)
chr3 (139-290)||(45981489-45981640)
chr3 (19-76)||(8392514-8392571)
chr3 (29-79)||(8391678-8391728)
chr3 (29-79)||(45981694-45981744)
chr3 (135-177)||(46725112-46725154)
chr3 (20-57)||(33551913-33551950)
[»] scaffold0018 (2 HSPs)
scaffold0018 (130-203)||(193760-193833)
scaffold0018 (29-79)||(193878-193928)
[»] scaffold0369 (2 HSPs)
scaffold0369 (130-203)||(8096-8170)
scaffold0369 (35-76)||(8007-8048)
[»] chr6 (1 HSPs)
chr6 (25-78)||(9410202-9410255)


Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-159; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 320 - 685
Target Start/End: Complemental strand, 13432394 - 13432017
Alignment:
Q  320 aagatgaaacgtaaaaacacgccaacttaaaggaacgtttttacatatttaagtcaataaataatacacatttccatcattttgtttatggcttcctttg 419  Q
    ||||||||  |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  13432394 aagatgaattgtaaaaacacaccaacttaaaggaacatttttacatatttaagtcaataaataatacacatttccatcattttgtttatggcttccttta 13432295  T
Q  420 tagtaacgaaagcaaccaagtcttgacatggacatttatgggattaaggcacagtatagtaacgctgtcacaatgagcca------------tgttgcag 507  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |||||| |||||||||            ||||||||    
T  13432294 tagtaacgaaagcaaccaagtcttgacctggacatttatgggattaaggcactgtatagtaacactgtcagaatgagccaatttgattttcatgttgcag 13432195  T
Q  508 tggtccaatctaaaagccctccctgtccttgcacgtggctctgggttatgcttcaatatgaaggtccacaaaccgtacaattgaggagcattcgtttgct 607  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13432194 tggtccaatctaaaagccctccctatccttgcacgtggctctgggttatgcttcaatatgaaggtccacaaaccgtacaattgaggagcattcgtttgct 13432095  T
Q  608 ttattttttagaagatatttttacgatataagttatcataaaaatttgtatgaaaaacagaaacctttactacaatat 685  Q
    |||||||||||||||||||||||| |||||| || |||||||||||||||||||||||||||||||||||||||||||    
T  13432094 ttattttttagaagatatttttacaatataaattgtcataaaaatttgtatgaaaaacagaaacctttactacaatat 13432017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 132 - 299
Target Start/End: Complemental strand, 13435059 - 13434892
Alignment:
Q  132 ttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttcctcatatgtttctatgtctatgaccata 231  Q
    ||||| || |||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |||| |||||||| |||||||||| ||||| |    
T  13435059 ttctgatctctcctttctagccgctcatcatttctcttgacacataaacatgcttttgccaactcacccttcgtcatatgtctctatgtctacgaccaca 13434960  T
Q  232 acgtttttgtaattggagttaacggaagatactaattacaaacggttagcaacttacaatgatagttt 299  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13434959 acgtttttgtaataggagttaacggaagataataattacaaacggttagcaacttacaatgatagttt 13434892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 130 - 290
Target Start/End: Original strand, 20588276 - 20588436
Alignment:
Q  130 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttcctcatatgtttctatgtctatgacca 229  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||  || |||||||||||||||||||||  ||  ||| |||| ||||   ||||    
T  20588276 ggttttggtccctcctttctagccactcatcatctctcttgacacataagcaagcttttgccaactcacacttcaccacgtgtgtctacgtctgccacca 20588375  T
Q  230 taacgtttttgtaattggagttaacggaagatactaattacaaacggttagcaacttacaa 290  Q
     |||||||||||||  ||||||||||| ||  || |||| |||||| || |||||||||||    
T  20588376 caacgtttttgtaacgggagttaacgggagggacgaattgcaaacgattggcaacttacaa 20588436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 137 - 203
Target Start/End: Complemental strand, 20587274 - 20587208
Alignment:
Q  137 gtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttc 203  Q
    |||||||||||||| || |||||||||||||||||||||||  || |||||||||||||||||||||    
T  20587274 gtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcacacttc 20587208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 20588168 - 20588225
Alignment:
Q  19 gagataaagaaattgaggttggagatgaagaagaaaaaacaaagggagatgaatgaac 76  Q
    ||||| ||||||||| ||||||||||||||||||||||| | ||||||| ||||||||    
T  20588168 gagatgaagaaattggggttggagatgaagaagaaaaaatagagggagaggaatgaac 20588225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 20587376 - 20587326
Alignment:
Q  29 aattgaggttggagatgaagaagaaaaaacaaagggagatgaatgaacaaa 79  Q
    ||||| ||||||||||||||||||||||| | ||||||| |||||||||||    
T  20587376 aattggggttggagatgaagaagaaaaaatagagggagaggaatgaacaaa 20587326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 751 - 782
Target Start/End: Complemental strand, 13431950 - 13431919
Alignment:
Q  751 tatgtcataaaagggttgcttttttcctacaa 782  Q
    ||||||||||||||||||||||||||||||||    
T  13431950 tatgtcataaaagggttgcttttttcctacaa 13431919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 13435163 - 13435112
Alignment:
Q  29 aattgaggttggagatgaagaagaaaaaa-caaagggagatgaatgaacaaa 79  Q
    ||||| |||||||||||||||| |||||| || |||||||||||||||||||    
T  13435163 aattggggttggagatgaagaaaaaaaaaacagagggagatgaatgaacaaa 13435112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524 (Bit Score: 61; Significance: 9e-26; HSPs: 4)
Name: scaffold0524
Description:

Target: scaffold0524; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 130 - 290
Target Start/End: Original strand, 8886 - 9046
Alignment:
Q  130 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttcctcatatgtttctatgtctatgacca 229  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||   | |||||||||||||||||||||  ||  ||| |||  |||||  ||||    
T  8886 ggttttggtccctcctttctagccactcatcatctctcttgacacataacaaagcttttgccaactcacacttcaccacgtgtgtctccgtctaccacca 8985  T
Q  230 taacgtttttgtaattggagttaacggaagatactaattacaaacggttagcaacttacaa 290  Q
     |||||||||||||  ||||||||||| ||  || |||| |||||| || |||||||||||    
T  8986 caacgtttttgtaacgggagttaacgggagggacgaattgcaaacgattggcaacttacaa 9046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 130 - 198
Target Start/End: Complemental strand, 7920 - 7852
Alignment:
Q  130 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcac 198  Q
    |||| |||||||||||||||| || |||||||||||||||||||||||  || ||||||||||||||||    
T  7920 ggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcac 7852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 8015 - 7965
Alignment:
Q  29 aattgaggttggagatgaagaagaaaaaacaaagggagatgaatgaacaaa 79  Q
    ||||| ||||||||||||||||||||| | | ||||||| |||||||||||    
T  8015 aattggggttggagatgaagaagaaaacatagagggagaggaatgaacaaa 7965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0524; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 8797 - 8838
Alignment:
Q  35 ggttggagatgaagaagaaaaaacaaagggagatgaatgaac 76  Q
    ||||||||||||||||||||||| | ||||||| ||||||||    
T  8797 ggttggagatgaagaagaaaaaatagagggagaggaatgaac 8838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 130 - 290
Target Start/End: Complemental strand, 9262 - 9102
Alignment:
Q  130 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttcctcatatgtttctatgtctatgacca 229  Q
    |||| ||||| |||||||||||||  ||||||||||||||||||||||  || |||||||||||||||||||||  ||  ||| ||| |||||   ||||    
T  9262 ggttttggtctctcctttctagccattcatcatctctcttgacacataagcaagcttttgccaactcacacttcaccacgtgtgtctctgtctgccacca 9163  T
Q  230 taacgtttttgtaattggagttaacggaagatactaattacaaacggttagcaacttacaa 290  Q
     |||||||||||||  ||||||||||| ||  || |||| |||||| || |||||||||||    
T  9162 caacgtttttgtaacgggagttaacgggagggacgaattgcaaacgattggcaacttacaa 9102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 130 - 287
Target Start/End: Original strand, 10263 - 10420
Alignment:
Q  130 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttcctcatatgtttctatgtctatgacca 229  Q
    |||| |||||||||||||||| || |||||||||||||||||||||||  || ||||||| |||||||||||||  ||  ||| |||  ||||   ||||    
T  10263 ggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgtcaactcacacttcgccacgtgtgtctccgtctgccacca 10362  T
Q  230 taacgtttttgtaattggagttaacggaagatactaattacaaacggttagcaactta 287  Q
     |||||||||||||  ||||||||||| ||  || |||| ||||||| ||| ||||||    
T  10363 caacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaactta 10420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 9376 - 9319
Alignment:
Q  19 gagataaagaaattgaggttggagatgaagaagaaaaaacaaagggagatgaatgaac 76  Q
    ||||| ||||||||| ||||||||||||||||||||||| | ||||||| ||||||||    
T  9376 gagatgaagaaattggggttggagatgaagaagaaaaaatagagggagaggaatgaac 9319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 10168 - 10218
Alignment:
Q  29 aattgaggttggagatgaagaagaaaaaacaaagggagatgaatgaacaaa 79  Q
    ||||| ||||| ||||||||||||||||| | ||||||| |||||||||||    
T  10168 aattggggttgaagatgaagaagaaaaaatagagggagaggaatgaacaaa 10218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 130 - 290
Target Start/End: Complemental strand, 46651603 - 46651443
Alignment:
Q  130 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttcctcatatgtttctatgtctatgacca 229  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||  || |||||||||||||||||||||  ||  ||| |||  ||||   ||||    
T  46651603 ggttttggtccctcctttctagccactcatcatctctcttgacacataagcaagcttttgccaactcacacttcaccacgtgtgtctccgtctgccacca 46651504  T
Q  230 taacgtttttgtaattggagttaacggaagatactaattacaaacggttagcaacttacaa 290  Q
     |||||||||||||  ||||||||||| ||  |  |||| |||||| || |||||||||||    
T  46651503 caacgtttttgtaacgggagttaacgggagggatgaattgcaaacgattggcaacttacaa 46651443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 130 - 290
Target Start/End: Original strand, 46652598 - 46652758
Alignment:
Q  130 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttcctcatatgtttctatgtctatgacca 229  Q
    |||| |||||||||||||||| || |||||||||||||||||||||||  || |||||||||||||||||||||  |   ||| |||  ||||   ||||    
T  46652598 ggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcacacttcgccgcgtgtgtctccgtctgccacca 46652697  T
Q  230 taacgtttttgtaattggagttaacggaagatactaattacaaacggttagcaacttacaa 290  Q
    ||||||||||||||  ||||||||||| ||  || |||| ||||||| ||| |||||||||    
T  46652698 taacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaa 46652758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 46651711 - 46651654
Alignment:
Q  19 gagataaagaaattgaggttggagatgaagaagaaaaaacaaagggagatgaatgaac 76  Q
    ||||| ||||||||| ||||||||||||||||||||||| | ||||||| ||||||||    
T  46651711 gagatgaagaaattggggttggagatgaagaagaaaaaatagagggagaggaatgaac 46651654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 46652503 - 46652553
Alignment:
Q  29 aattgaggttggagatgaagaagaaaaaacaaagggagatgaatgaacaaa 79  Q
    ||||| ||||||||||||||||||||||| | ||||||| |||||||||||    
T  46652503 aattggggttggagatgaagaagaaaaaatagagggagaggaatgaacaaa 46652553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 46604807 - 46604766
Alignment:
Q  18 agagataaagaaattgaggttggagatgaagaagaaaaaaca 59  Q
    |||||| |||||| ||||||||||||||||||||||||||||    
T  46604807 agagatgaagaaaatgaggttggagatgaagaagaaaaaaca 46604766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 9e-23; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 135 - 290
Target Start/End: Original strand, 35506750 - 35506905
Alignment:
Q  135 tggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttcctcatatgtttctatgtctatgaccataacg 234  Q
    |||||||||||||||| || |||||||||||||||||||||||  || |||||||||||||||||||||  | | ||| |||  ||||   |||| ||||    
T  35506750 tggtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcacacttcgccgtgtgtgtctccgtctgccaccacaacg 35506849  T
Q  235 tttttgtaattggagttaacggaagatactaattacaaacggttagcaacttacaa 290  Q
    |||||||||  ||||||||||| ||  || |||| ||||||| ||| |||||||||    
T  35506850 tttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaa 35506905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 35505876 - 35505819
Alignment:
Q  19 gagataaagaaattgaggttggagatgaagaagaaaaaacaaagggagatgaatgaac 76  Q
    ||||| ||||||||| ||||||||||||||||||||||| | ||||||| ||||||||    
T  35505876 gagatgaagaaattggggttggagatgaagaagaaaaaatagagggagaggaatgaac 35505819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 203
Target Start/End: Complemental strand, 35505753 - 35505691
Alignment:
Q  141 ctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttc 203  Q
    ||||||||||||| |||||||||||| |||| |||||   | |||||||||||||||||||||    
T  35505753 ctcctttctagccactcatcatctcttttgaaacataagaaagcttttgccaactcacacttc 35505691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 226 - 288
Target Start/End: Complemental strand, 35750265 - 35750203
Alignment:
Q  226 accataacgtttttgtaattggagttaacggaagatactaattacaaacggttagcaacttac 288  Q
    |||| |||||||||||||| ||| ||||||| ||| ||||||| |||||||||| ||||||||    
T  35750265 accacaacgtttttgtaatgggaattaacgggagagactaattgcaaacggttaacaacttac 35750203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 45448180 - 45448221
Alignment:
Q  18 agagataaagaaattgaggttggagatgaagaagaaaaaaca 59  Q
    |||||| |||||| ||||||||||||||||||||||||||||    
T  45448180 agagatgaagaaaatgaggttggagatgaagaagaaaaaaca 45448221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 35506652 - 35506702
Alignment:
Q  29 aattgaggttggagatgaagaagaaaaaacaaagggagatgaatgaacaaa 79  Q
    ||||| ||||||||||||||||| ||||| | ||||||| |||||||||||    
T  35506652 aattggggttggagatgaagaaggaaaaatagagggagaggaatgaacaaa 35506702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 35750693 - 35750753
Alignment:
Q  137 gtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcac 198  Q
    ||||||||||| ||||| ||||| | |||||||||||||||  ||||| |||||||||||||    
T  35750693 gtccctcctttttagccactcattagctctcttgacacataagcatgc-tttgccaactcac 35750753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 5e-21; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 130 - 290
Target Start/End: Complemental strand, 42775662 - 42775502
Alignment:
Q  130 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttcctcatatgtttctatgtctatgacca 229  Q
    |||| |||||||||||||||| || |||||||||||||||||||||||  || |||||||||||||||||||||  |   ||| |||  ||||   ||||    
T  42775662 ggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcacacttcgccgcgtgtgtctccgtctgccacca 42775563  T
Q  230 taacgtttttgtaattggagttaacggaagatactaattacaaacggttagcaacttacaa 290  Q
     |||||||||||||  ||||||||||| ||  || |||| ||||||| ||| |||||||||    
T  42775562 caacgtttttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaa 42775502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 130 - 299
Target Start/End: Original strand, 37986316 - 37986485
Alignment:
Q  130 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttcctcatatgtttctatgtctatgacca 229  Q
    |||||||||||||||||||||||| ||||||||||||||||||| |||  | || ||||| |||||||| ||||  ||| ||| ||| |||||   ||||    
T  37986316 ggttctggtccctcctttctagccactcatcatctctcttgacatataagcctgtttttgtcaactcacccttcgccatgtgtgtctctgtctgccacca 37986415  T
Q  230 taacgtttttgtaattggagttaacggaagatactaattacaaacggttagcaacttacaatgatagttt 299  Q
     ||||||||||||   ||||||||  | ||  ||| ||| ||||| |||| |||||||||||||| ||||    
T  37986416 caacgtttttgtagcgggagttaagtggagggactgattgcaaacagttaacaacttacaatgatggttt 37986485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 42776635 - 42776708
Alignment:
Q  130 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttc 203  Q
    |||| ||||| ||||||||||||| |||||||||||||||||||||||  || ||||||||||||||| |||||    
T  42776635 ggttttggtctctcctttctagccactcatcatctctcttgacacataagcaagcttttgccaactcagacttc 42776708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 33738110 - 33738061
Alignment:
Q  18 agagataaagaaattgaggttggagatgaagaagaaaaaacaaagggaga 67  Q
    |||||| |||||||||||||||||||| ||||| ||||||||||||||||    
T  33738110 agagatgaagaaattgaggttggagataaagaaaaaaaaacaaagggaga 33738061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 42775757 - 42775707
Alignment:
Q  29 aattgaggttggagatgaagaagaaaaaacaaagggagatgaatgaacaaa 79  Q
    ||||| ||||||| ||||||||||||||| | ||||||| |||||||||||    
T  42775757 aattggggttggatatgaagaagaaaaaatagagggagaggaatgaacaaa 42775707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 12890602 - 12890565
Alignment:
Q  20 agataaagaaattgaggttggagatgaagaagaaaaaa 57  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  12890602 agatgaagaaattggggttggagatgaagaagaaaaaa 12890565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 42776543 - 42776584
Alignment:
Q  35 ggttggagatgaagaagaaaaaacaaagggagatgaatgaac 76  Q
    ||||||||||||||||||||||  ||||||||| ||||||||    
T  42776543 ggttggagatgaagaagaaaaagtaaagggagaggaatgaac 42776584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 5e-21; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 138 - 290
Target Start/End: Original strand, 39929179 - 39929331
Alignment:
Q  138 tccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttcctcatatgtttctatgtctatgaccataacgttt 237  Q
    ||||||||||||| || |||||||||||||||||||||||  || |||||||||||||||||||||  |   ||| |||  ||||   ||||||||||||    
T  39929179 tccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcacacttcgccgcgtgtgtctccgtctgccaccataacgttt 39929278  T
Q  238 ttgtaattggagttaacggaagatactaattacaaacggttagcaacttacaa 290  Q
    ||||||  ||||||||||| ||  || |||| ||||||| ||| |||||||||    
T  39929279 ttgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaa 39929331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 138 - 256
Target Start/End: Complemental strand, 39928167 - 39928049
Alignment:
Q  138 tccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttcctcatatgtttctatgtctatgaccataacgttt 237  Q
    |||||||||||||||| | |||||||||||||||||||||  || |||||||||||||||||||||  || |||| |||  ||||   |||| |||||||    
T  39928167 tccctcctttctagccacgcatcatctctcttgacacataagcaagcttttgccaactcacacttcaccacatgtgtctccgtctgccaccacaacgttt 39928068  T
Q  238 ttgtaattggagttaacgg 256  Q
    ||||||  |||||||||||    
T  39928067 ttgtaacgggagttaacgg 39928049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 138 - 203
Target Start/End: Complemental strand, 46253209 - 46253144
Alignment:
Q  138 tccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttc 203  Q
    ||||||||||||| || |||||||||||||||||||||||  || |||||||||||||||||||||    
T  46253209 tccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcacacttc 46253144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 198
Target Start/End: Complemental strand, 5236472 - 5236409
Alignment:
Q  135 tggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcac 198  Q
    ||||||||||||||||||| |||||||||||||||||||||||    |||||||||||||||||    
T  5236472 tggtccctcctttctagccactcatcatctctcttgacacataattctgcttttgccaactcac 5236409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 5236574 - 5236520
Alignment:
Q  25 aagaaattgaggttggagatgaagaagaaaaaacaaagggagatgaatgaacaaa 79  Q
    ||||||||  ||||||||||||||||||||||||||||||||| |||||||||||    
T  5236574 aagaaattagggttggagatgaagaagaaaaaacaaagggagaggaatgaacaaa 5236520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 39928284 - 39928227
Alignment:
Q  19 gagataaagaaattgaggttggagatgaagaagaaaaaacaaagggagatgaatgaac 76  Q
    ||||| ||||||||| ||||||||||||||||||||||| | ||||||| ||||||||    
T  39928284 gagatgaagaaattggggttggagatgaagaagaaaaaatagagggagaggaatgaac 39928227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 5236904 - 5236951
Alignment:
Q  130 ggttctggtccctcctttctagccgctcatcatctctcttgacacata 177  Q
    |||| ||||||||||||||||||| ||| |||||||||||||||||||    
T  5236904 ggttttggtccctcctttctagccactcgtcatctctcttgacacata 5236951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 39929076 - 39929126
Alignment:
Q  29 aattgaggttggagatgaagaagaaaaaacaaagggagatgaatgaacaaa 79  Q
    ||||| ||||||||||||||||||||||| | || |||| |||||||||||    
T  39929076 aattggggttggagatgaagaagaaaaaatagagagagaggaatgaacaaa 39929126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 37 - 79
Target Start/End: Complemental strand, 46253305 - 46253263
Alignment:
Q  37 ttggagatgaagaagaaaaaacaaagggagatgaatgaacaaa 79  Q
    ||||||||||||||||||||| | ||||||| |||||||||||    
T  46253305 ttggagatgaagaagaaaaaatagagggagaagaatgaacaaa 46253263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 4241359 - 4241404
Alignment:
Q  20 agataaagaaattgaggttggagatgaagaagaaaaaacaaaggga 65  Q
    |||| ||||||||| |||||||||| |||||||||||||| |||||    
T  4241359 agatgaagaaattggggttggagataaagaagaaaaaacagaggga 4241404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 33609032 - 33609073
Alignment:
Q  18 agagataaagaaattgaggttggagatgaagaagaaaaaaca 59  Q
    |||||| |||||| |||| |||||||||||||||||||||||    
T  33609032 agagatgaagaaaatgagattggagatgaagaagaaaaaaca 33609073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 9e-20; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 9e-20
Query Start/End: Original strand, 138 - 256
Target Start/End: Complemental strand, 43545576 - 43545458
Alignment:
Q  138 tccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttcctcatatgtttctatgtctatgaccataacgttt 237  Q
    |||||||||||||||| |||||||||||||||||||||||   | |||||||||||||||||||||  || |||| |||  ||||   |||| |||||||    
T  43545576 tccctcctttctagccactcatcatctctcttgacacataaggaagcttttgccaactcacacttcaccacatgtgtctccgtctgccaccacaacgttt 43545477  T
Q  238 ttgtaattggagttaacgg 256  Q
    ||||||  |||||||||||    
T  43545476 ttgtaacgggagttaacgg 43545458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 25008324 - 25008251
Alignment:
Q  130 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttc 203  Q
    |||| |||||||||||||||| || |||||||||||||||||||||||  || |||||||||||||||||||||    
T  25008324 ggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcacacttc 25008251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 28848796 - 28848723
Alignment:
Q  130 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttc 203  Q
    |||| |||||||||||||||| || |||||||||||||||||||||||  || |||||||||||||||||||||    
T  28848796 ggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcacacttc 28848723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 28849795 - 28849868
Alignment:
Q  130 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttc 203  Q
    |||| |||||||||||||||| || |||||||||||||||||||||||  || |||||||||||||||||||||    
T  28849795 ggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcacacttc 28849868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 130 - 290
Target Start/End: Original strand, 25009302 - 25009462
Alignment:
Q  130 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttcctcatatgtttctatgtctatgacca 229  Q
    |||| |||||||||||||||||||  |||||||||||| |||||||||  || |||||||||||||||||||||  ||| ||| |||  ||||   ||||    
T  25009302 ggttttggtccctcctttctagccattcatcatctctcctgacacataagcaagcttttgccaactcacacttcaccatgtgtgtctccgtctgccacca 25009401  T
Q  230 taacgtttttgtaattggagttaacggaagatactaattacaaacggttagcaacttacaa 290  Q
     |||||||||||||   |||||||||| ||  |  |||| |||||| || |||||||||||    
T  25009402 caacgtttttgtaacgagagttaacgggagggatgaattgcaaacgattggcaacttacaa 25009462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 43546547 - 43546620
Alignment:
Q  130 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttc 203  Q
    |||| |||||||||||||||| || |||||||||||||||||||||||  ||  ||||||||||||||||||||    
T  43546547 ggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaaacttttgccaactcacacttc 43546620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 28848891 - 28848841
Alignment:
Q  29 aattgaggttggagatgaagaagaaaaaacaaagggagatgaatgaacaaa 79  Q
    ||||| ||||||||||||||||||||||| | ||||||| |||||||||||    
T  28848891 aattggggttggagatgaagaagaaaaaatagagggagaggaatgaacaaa 28848841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 25008420 - 25008370
Alignment:
Q  29 aattgaggttggagatgaagaagaaaaaacaaagggagatgaatgaacaaa 79  Q
    ||||| ||||| ||||||||||||||||| | ||||||| |||||||||||    
T  25008420 aattggggttgaagatgaagaagaaaaaatagagggagaggaatgaacaaa 25008370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 57
Target Start/End: Original strand, 28849683 - 28849721
Alignment:
Q  19 gagataaagaaattgaggttggagatgaagaagaaaaaa 57  Q
    ||||| ||||||||| |||||||||||||||||||||||    
T  28849683 gagatgaagaaattggggttggagatgaagaagaaaaaa 28849721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 43546452 - 43546502
Alignment:
Q  29 aattgaggttggagatgaagaagaaaaaacaaagggagatgaatgaacaaa 79  Q
    ||||| ||||||||||||||||||||||| | || |||| |||||||||||    
T  43546452 aattggggttggagatgaagaagaaaaaatagagagagaggaatgaacaaa 43546502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 11670217 - 11670176
Alignment:
Q  18 agagataaagaaattgaggttggagatgaagaagaaaaaaca 59  Q
    |||||| |||||||||  ||||||||||||||||||||||||    
T  11670217 agagatgaagaaattggagttggagatgaagaagaaaaaaca 11670176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 25009207 - 25009248
Alignment:
Q  35 ggttggagatgaagaagaaaaaacaaagggagatgaatgaac 76  Q
    ||||||||||||||||||||||| | ||||||| ||||||||    
T  25009207 ggttggagatgaagaagaaaaaatagagggagaggaatgaac 25009248  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 76
Target Start/End: Complemental strand, 43545679 - 43545638
Alignment:
Q  35 ggttggagatgaagaagaaaaaacaaagggagatgaatgaac 76  Q
    ||||||||||||||||||||||| | ||||||| ||||||||    
T  43545679 ggttggagatgaagaagaaaaaatagagggagaggaatgaac 43545638  T

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Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 8391633 - 8391560
Alignment:
Q  130 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttc 203  Q
    |||| |||||||||||||||| || |||||||||||||||||||||||  || |||||||||||||||||||||    
T  8391633 ggttttggtccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcacacttc 8391560  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 45982626 - 45982699
Alignment:
Q  130 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttc 203  Q
    |||| ||||||||| ||||||||| |||||||||||||||||||||||  || |||||||||||||||||||||    
T  45982626 ggttttggtccctcatttctagccactcatcatctctcttgacacataagcaagcttttgccaactcacacttc 45982699  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 130 - 290
Target Start/End: Original strand, 8392620 - 8392780
Alignment:
Q  130 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttcctcatatgtttctatgtctatgacca 229  Q
    |||| ||||||||| ||||||||| |||||||||||||||||||||||  || |||||||||||||||||| ||  ||  ||| |||  ||||   ||||    
T  8392620 ggttttggtccctcttttctagccactcatcatctctcttgacacataagcaagcttttgccaactcacacctcaccacgtgtgtctccgtctgccacca 8392719  T
Q  230 taacgtttttgtaattggagttaacggaagatactaattacaaacggttagcaacttacaa 290  Q
     |||||||||||||  ||||||||||| ||  |  |||| |||||| || |||||||||||    
T  8392720 caacgtttttgtaacgggagttaacgggagggatgaattgcaaacgattggcaacttacaa 8392780  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 139 - 290
Target Start/End: Complemental strand, 45981640 - 45981489
Alignment:
Q  139 ccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttcctcatatgtttctatgtctatgaccataacgtttt 238  Q
    |||||||||||| || |||||||||||||||||||||||  || |||||||||||||||||||||  |   ||| |||  ||||   |||| ||||||||    
T  45981640 ccctcctttctaaccactcatcatctctcttgacacataagcaagcttttgccaactcacacttcgccgcgtgtgtctccgtctgcaaccacaacgtttt 45981541  T
Q  239 tgtaattggagttaacggaagatactaattacaaacggttagcaacttacaa 290  Q
    |||||  ||||||||||| ||  || |||| ||||||| ||| |||||||||    
T  45981540 tgtaacgggagttaacgggagggacgaattgcaaacggctagtaacttacaa 45981489  T

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Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 8392514 - 8392571
Alignment:
Q  19 gagataaagaaattgaggttggagatgaagaagaaaaaacaaagggagatgaatgaac 76  Q
    ||||| ||||||||| ||||||||||||||||||||||| | ||||||| ||||||||    
T  8392514 gagatgaagaaattggggttggagatgaagaagaaaaaatagagggagaggaatgaac 8392571  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 8391728 - 8391678
Alignment:
Q  29 aattgaggttggagatgaagaagaaaaaacaaagggagatgaatgaacaaa 79  Q
    ||||| ||||||||||||||||||||||| | ||||||| |||||||||||    
T  8391728 aattggggttggagatgaagaagaaaaaatagagggagaggaatgaacaaa 8391678  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 45981744 - 45981694
Alignment:
Q  29 aattgaggttggagatgaagaagaaaaaacaaagggagatgaatgaacaaa 79  Q
    ||||| ||||||||||||||||||||||| | ||||||| |||||||||||    
T  45981744 aattggggttggagatgaagaagaaaaaatagagggagaggaatgaacaaa 45981694  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 135 - 177
Target Start/End: Original strand, 46725112 - 46725154
Alignment:
Q  135 tggtccctcctttctagccgctcatcatctctcttgacacata 177  Q
    ||||||| ||||||||||| ||||||||||||||||| |||||    
T  46725112 tggtcccccctttctagccactcatcatctctcttgatacata 46725154  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 33551950 - 33551913
Alignment:
Q  20 agataaagaaattgaggttggagatgaagaagaaaaaa 57  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  33551950 agatgaagaaattggggttggagatgaagaagaaaaaa 33551913  T

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Target: scaffold0018 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 130 - 203
Target Start/End: Complemental strand, 193833 - 193760
Alignment:
Q  130 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgcttttgccaactcacacttc 203  Q
    |||| |||||||||||||||| || ||||||||| |||||||||||||  || |||||||||||||||||||||    
T  193833 ggttttggtccctcctttctaaccactcatcatcgctcttgacacataagcaagcttttgccaactcacacttc 193760  T

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Target: scaffold0018; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 29 - 79
Target Start/End: Complemental strand, 193928 - 193878
Alignment:
Q  29 aattgaggttggagatgaagaagaaaaaacaaagggagatgaatgaacaaa 79  Q
    ||||| |||||||||||||||||||| || | ||||||| |||||||||||    
T  193928 aattggggttggagatgaagaagaaataatatagggagaggaatgaacaaa 193878  T

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Target: scaffold0369 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 2)
Name: scaffold0369
Description:

Target: scaffold0369; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 130 - 203
Target Start/End: Original strand, 8096 - 8170
Alignment:
Q  130 ggttctggtccctcctttctagccgctcatcatctctcttgacacatagacatgc-ttttgccaactcacacttc 203  Q
    |||| ||||||||||||||||||| |||||||||||||||||||||||  || || |||| ||||||||||||||    
T  8096 ggttttggtccctcctttctagccactcatcatctctcttgacacataagcaagcttttttccaactcacacttc 8170  T

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Target: scaffold0369; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 76
Target Start/End: Original strand, 8007 - 8048
Alignment:
Q  35 ggttggagatgaagaagaaaaaacaaagggagatgaatgaac 76  Q
    ||||||||||||||||||||||| | ||||||| ||||||||    
T  8007 ggttggagatgaagaagaaaaaatagagggagaggaatgaac 8048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 9410255 - 9410202
Alignment:
Q  25 aagaaattgaggttggagatgaagaagaaaaaacaaagggagatgaatgaacaa 78  Q
    ||||||||| | ||||||||||||||||||||| | ||||||| | ||||||||    
T  9410255 aagaaattgggattggagatgaagaagaaaaaatagagggagagggatgaacaa 9410202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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