View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20897_low_9 (Length: 384)
Name: NF20897_low_9
Description: NF20897
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20897_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 18 - 374
Target Start/End: Complemental strand, 40899722 - 40899366
Alignment:
| Q |
18 |
attacagcctttgtctatcgtgatcttactggtatatttataagttcatgtcatttcatacattgcttcttattgttaatatttgtgccattaatcctta |
117 |
Q |
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| T |
40899722 |
attacagcctttgtctatcgtgatcttactggtatatttataagttcatgtcatttcatacattgcttcttattgttaatatttgtgccattaatcctta |
40899623 |
T |
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| Q |
118 |
tacactgaatgtgtttaacaaacatttgttgtaggcatatggtgcactgataactcttatctcattgacaccatgttggtatgtcatggtaacacatatc |
217 |
Q |
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| T |
40899622 |
tacactgaatgtgtttaacaaacatttgttgtaggcatatggtgcactgataactcttatctcattgacaccatgttggtatgtcatggtaacacatatc |
40899523 |
T |
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| Q |
218 |
gagaaacaagcgaatttgagctcagaaaatattgtaacccaactccaatcagaaattaagtactcggctgaactgttgcacccgatgaaatcatcatcga |
317 |
Q |
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| T |
40899522 |
gagaaacaagcgaatttgagctcagaaaatattgtaacccaactccaatcagaaattaagtactcagctgaactgttgcacccgatgaaatcatcatcga |
40899423 |
T |
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| Q |
318 |
caaatttagcaagattgttgagttcaagacttgattctactaacatctctttctctg |
374 |
Q |
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| T |
40899422 |
caaatttagcaagattgttgagttcaagacttgattctactaacatctctttctctg |
40899366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 182 - 374
Target Start/End: Complemental strand, 39034111 - 39033919
Alignment:
| Q |
182 |
ttgacaccatgttggtatgtcatggtaacacatatcgagaaacaagcgaatttgagctcagaaaatattgtaacccaactccaatcagaaattaagtact |
281 |
Q |
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| T |
39034111 |
ttgacaccatgctggtatctcatggtcacacatattgagaaaagtgtgaatttgcactcagcaaatattgtgtcacaattgcaatcagaaattgagtact |
39034012 |
T |
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| Q |
282 |
cggctgaactgttgcacccgatgaaatcatcatcgacaaatttagcaagattgttgagttcaagacttgattctactaacatctctttctctg |
374 |
Q |
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| T |
39034011 |
cagctgaactattgcatccaatgaaatcatcatcaacaaatttatctacattattgagctcaacccttaattctactaatatcaccttctctg |
39033919 |
T |
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