View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20898_high_4 (Length: 240)
Name: NF20898_high_4
Description: NF20898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20898_high_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 7006750 - 7006526
Alignment:
| Q |
1 |
agccattttgttcctttggtaacggactagtaagcttgtgtcttttgctagcttctcgctccattgaagtggctcaacacctacttcagctcatgctttg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7006750 |
agccattttgttcctttggtaacggactagtaagcttgtgtcttttgctagattctcactccattgaagtggctcaacacctacttcagctcatgctttg |
7006651 |
T |
|
| Q |
101 |
ttgtgagattctaagaactctttggctgctggtggaagaggtggtggtgctggctgagacaacgagcagggatagagttgctagggaaaagagaggaaaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7006650 |
ttgtgagattctaagaactctttggctgctggtggaagagatggtggtgctggctgagacaacgagcagggatagagttgctagggaaaagagaggaaaa |
7006551 |
T |
|
| Q |
201 |
taatgtaacattttcatgttgaaaa |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
7006550 |
taatgtaacattttcatgttgaaaa |
7006526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 152
Target Start/End: Complemental strand, 7013134 - 7012983
Alignment:
| Q |
1 |
agccattttgttcctttggtaacggactagtaagcttgtgtcttttgctagcttctcgctccattgaagtggctcaacacctacttcagctcatgctttg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
7013134 |
agccattttgttcctttggtaacggactagtaagcttgtgtcttttgctagcttctcgctccattgaagtggctcaacacctacttcagctcttgctttg |
7013035 |
T |
|
| Q |
101 |
ttgtgagattctaagaactctttggctgctggtggaagaggtggtggtgctg |
152 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||| ||||||||| ||||||| |
|
|
| T |
7013034 |
ttgtgtgattctaagaactctttagctgctggtgtaagaggtggcggtgctg |
7012983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 156 - 219
Target Start/End: Complemental strand, 7012941 - 7012875
Alignment:
| Q |
156 |
gagacaacgagcagggatagagttgctagggaaaaga---gaggaaaataatgtaacattttcatgt |
219 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
7012941 |
gagacaaggagcagggatagagttgctagggagaagaagagaggaaaataatgtaacattttcatgt |
7012875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 89; Significance: 5e-43; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 11 - 155
Target Start/End: Original strand, 7694870 - 7695014
Alignment:
| Q |
11 |
ttcctttggtaacggactagtaagcttgtgtcttttgctagcttctcgctccattgaagtggctcaacacctacttcagctcatgctttgttgtgagatt |
110 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||| ||||||||| ||| |
|
|
| T |
7694870 |
ttcctttggtaattgactagtaagcatgtgtcttttgctagcttctcgccccattaaagtgggtcaacacctacttcagctctatctttgttgttctatt |
7694969 |
T |
|
| Q |
111 |
ctaagaactctttggctgctggtggaagaggtggtggtgctggct |
155 |
Q |
| |
|
||||||||| |||||||| |||||||||||||||||||||||||| |
|
|
| T |
7694970 |
ctaagaactttttggctggtggtggaagaggtggtggtgctggct |
7695014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University