View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20898_low_2 (Length: 485)
Name: NF20898_low_2
Description: NF20898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20898_low_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 63 - 317
Target Start/End: Complemental strand, 43016318 - 43016064
Alignment:
| Q |
63 |
gctaatacatgatgctgtctttcatgcacttcctgatcacatgagcctcctgatgcttgcatttctcttgttgtagaaccttctcctattccaacctaca |
162 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43016318 |
gctaatacatgatgctgtctttcatgcacttcctgatcacatgagcctcctgatgcttgcatttctcttgttgtagaaccttctcctattccaacctaca |
43016219 |
T |
|
| Q |
163 |
atatatataatggttgtatcaatcatcatcaaaactatatttatctatttataatgttacattttcttttcttagctaggtgggtaaaccaacgttggtt |
262 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43016218 |
atatatataatggttgtatcaatcatcatcaaaactatatttatttatttataatgttacattttcttttcttagctaggtgggtaaaccaacgttggtt |
43016119 |
T |
|
| Q |
263 |
agctagctactgacactgatttatcatccggtcaggtccatacaaatttaatttt |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43016118 |
agctagctactgacactgatttatcatccggtcaggtccatacaaatttaatttt |
43016064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 311 - 467
Target Start/End: Original strand, 43015796 - 43015952
Alignment:
| Q |
311 |
taatttttattggtaatttaaatttcaataaagcatagcatttgattggaacatggatatataggcacgttaatttctaaagaaatgaacgtgatgtttc |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43015796 |
taatttttattggtaatttaaatttcaataaagcatagcatttgattggaacatggatgtataggcacgttaatttctaaagaaatgaacgtgatgtttc |
43015895 |
T |
|
| Q |
411 |
actagcagctatacattattaactttataattatatgaaatttcaacgttcggttgg |
467 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43015896 |
actagcagctatacattattaactttataattatatgaaatttcaacgttcggttgg |
43015952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University