View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20898_low_3 (Length: 248)
Name: NF20898_low_3
Description: NF20898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20898_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 7006944 - 7007183
Alignment:
| Q |
1 |
tacaacttgggtgttcacaggctacttgtactgataagaaggaagctggtttgactatttgtttctatgatccacctgcacctcgtagagtcattggaga |
100 |
Q |
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| T |
7006944 |
tacaacttgggtgttcacaggctacttgtactgataagaaggaagctggtttgactatttgtttctatgatccacctgcacctcgtagagtcattggaga |
7007043 |
T |
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| Q |
101 |
gagtccattttgattggtgtttatgtatgatgatatgaataatatgatgtatttcaagtaatgttatgttagttaggttcttgaattagattatgtaagt |
200 |
Q |
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| T |
7007044 |
gagtccattttgattggtgtttatgtatgatgatatgaataatatgatgtatttcaagtaatgttatgttagttaggttcttgaattagattatgtaagt |
7007143 |
T |
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| Q |
201 |
gtaatgtaaactatgctagagagatcaatatgtgcctatg |
240 |
Q |
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| T |
7007144 |
gtaatgtaaactatgctagagagatcaatatgtgcctatg |
7007183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 2 - 232
Target Start/End: Original strand, 7013329 - 7013547
Alignment:
| Q |
2 |
acaacttgggtgttcacaggctacttgtactgataagaaggaagctggtttgactatttgtttctatgatccacctgcacctcgtagagtcattggagag |
101 |
Q |
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| T |
7013329 |
acaacttgggtgttcacaagctacttgtactggtaagaaggaagctagtttgactatttgtttctatgatccacctg------gtaatgttattggagag |
7013422 |
T |
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| Q |
102 |
agtccattttgattggtgtttatgtatgatgatatgaataatatgatgtatttcaagtaatgttatgttagttaggttcttgaattagattatgtaagtg |
201 |
Q |
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| T |
7013423 |
agtccattttgactgatgataatgtatgatgatatgaataacatgatgtatttcaagtaatgttacttt------tttcttcaattaaattatgtaagtt |
7013516 |
T |
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| Q |
202 |
taatgtaaactatgctagagagatcaatatg |
232 |
Q |
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| T |
7013517 |
taatgtaacctgtgctacagagatcaatatg |
7013547 |
T |
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