View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20898_low_5 (Length: 234)
Name: NF20898_low_5
Description: NF20898
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20898_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 19 - 219
Target Start/End: Original strand, 38226452 - 38226652
Alignment:
| Q |
19 |
cagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaacttgatactcagtctgaaacaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38226452 |
cagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaacttgatactcagtctgaaacaa |
38226551 |
T |
|
| Q |
119 |
ataaattcatgttgctcactatatacccaacaaagtaatggactagttttatgttttagagttaaattgagttgacaaaaactacaagtaaggattctct |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38226552 |
ataaattcatgttgctcactatatacccaacaaagtaatggactagttttatgttttagagttaaattgagttgacaaaaactacaagtaaggattctct |
38226651 |
T |
|
| Q |
219 |
g |
219 |
Q |
| |
|
| |
|
|
| T |
38226652 |
g |
38226652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 38214073 - 38214242
Alignment:
| Q |
19 |
cagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaacttgatactcagtctgaaacaa |
118 |
Q |
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|||||||||||||||||||||||||| |||||| ||||||||||||||| ||||| |||||| ||||||||||||||||||||| ||||||||| |
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| T |
38214073 |
cagtttgtagtgggagacttgtcctcatcacatgaacacaaccatttctcaaattatgatctgtggtacaagattcaacttgatactcaacctgaaacaa |
38214172 |
T |
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| Q |
119 |
ataaattcatgttgctcactatatacccaacaaagtaatggactagttttatgttttagagttaaattgag |
189 |
Q |
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| |||| |||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
38214173 |
a-aaatccatgttgctcactaaacacccaacaaagtaatggactagttttgtgttttagagttaaattgag |
38214242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 148
Target Start/End: Original strand, 38237991 - 38238120
Alignment:
| Q |
19 |
cagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaacttgatactcagtctgaaacaa |
118 |
Q |
| |
|
||||||| | ||||||||||||||||||||||| |||||| ||||| || ||||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
38237991 |
cagtttgaaatgggagacttgtcctcttcacatgaacacaggaatttccctccttatggtctgtgctgcaagattcaacttgatactcattctgaaacaa |
38238090 |
T |
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| Q |
119 |
ataaattcatgttgctcactatatacccaa |
148 |
Q |
| |
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| ||| ||||||||||||||||||||||| |
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| T |
38238091 |
agaaaaccatgttgctcactatatacccaa |
38238120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 151
Target Start/End: Original strand, 38242966 - 38243099
Alignment:
| Q |
19 |
cagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaacttgatactcagtctgaaacaa |
118 |
Q |
| |
|
||||||| | ||||||||||||||||||||||| |||||| |||||| || |||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
38242966 |
cagtttgaaatgggagacttgtcctcttcacatgaacacacccattttcctccctatggtctgtgctgcaagattcaacttgatactcaatctgaaacaa |
38243065 |
T |
|
| Q |
119 |
ataaattcatgttgctcactat-atacccaacaa |
151 |
Q |
| |
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| |||| ||||||||||||||| ||||||||||| |
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| T |
38243066 |
agaaatccatgttgctcactatgatacccaacaa |
38243099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 21 - 170
Target Start/End: Original strand, 38253321 - 38253470
Alignment:
| Q |
21 |
gtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaacttgatactcagtctgaaacaaat |
120 |
Q |
| |
|
||||||||||||||||||||||| || |||| |||||| ||||||| || || || ||| ||| |||||||| ||||| ||||||| |||||||||| |
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| T |
38253321 |
gtttgtagtgggagacttgtcctttttacatgaacacacccatttccctccttttgatctatgctgcaagatttaacttcatactcaacctgaaacaaag |
38253420 |
T |
|
| Q |
121 |
aaattcatgttgctcactatatacccaacaaagtaatggactagttttat |
170 |
Q |
| |
|
|||| ||||||||| | |||||||||||| |||||||||||| |||| |
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| T |
38253421 |
aaatctatgttgctcgcattatacccaacaacttaatggactagtgttat |
38253470 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 38220111 - 38220226
Alignment:
| Q |
19 |
cagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaacttgatactcagtctgaaacaa |
118 |
Q |
| |
|
||||||| | |||||||||| |||||||||||| |||||||||||||| || ||||||| |||| ||| |||||||||||||||||| ||||||||| |
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| T |
38220111 |
cagtttgaaatgggagacttatcctcttcacatgaacacaaccatttccatccttatggtttgtggtgcatgattcaacttgatactcaacctgaaacaa |
38220210 |
T |
|
| Q |
119 |
ataaattcatgttgct |
134 |
Q |
| |
|
| |||| ||| ||||| |
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|
| T |
38220211 |
agaaatccatattgct |
38220226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 170
Target Start/End: Original strand, 38248170 - 38248316
Alignment:
| Q |
23 |
ttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaacttgatactcagtctgaaacaaataa |
122 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||| ||||||| || | || ||||||| |||||||||||| ||||||||| |||||||||| || |
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| T |
38248170 |
ttgtagtgggagacttgtccttttcacatgaacacacccatttccctcctattgatctgtgctgcaagattcaac-tgatactcaacctgaaacaaagaa |
38248268 |
T |
|
| Q |
123 |
attcatgttgctcactatatacccaacaaagtaatggactagttttat |
170 |
Q |
| |
|
|| | ||||||| | ||||||| |||||| || ||||||||| |||| |
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| T |
38248269 |
atctacgttgctcgcaatatacctaacaaactactggactagtgttat |
38248316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 17454548 - 17454708
Alignment:
| Q |
19 |
cagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaacttgatactcagtctgaaacaa |
118 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||||||||||| || | ||||||||||| |||||||||||||||||||||| |||||||||| |
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| T |
17454548 |
cagtttgcagtgggagacttgtcctcttcacatgaacacaaccatttccctcctcatggtctgtgctgcaagattcaacttgatactcaatctgaaacaa |
17454647 |
T |
|
| Q |
119 |
ataaattcatgttgctcacta----tatacccaacaaagtaatggactagttttatgtttt |
175 |
Q |
| |
|
| ||||||||||||||||||| |||||||||||||| |||| ||| | ||||||||| |
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|
| T |
17454648 |
agaaattcatgttgctcactataattatacccaacaaagaaatgaactgttgttatgtttt |
17454708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 17433469 - 17433600
Alignment:
| Q |
19 |
cagtttgtagtgggagacttgtcctcttcacatcaacacaaccatttctttctttatggtctgtgccgcaagattcaacttgatactcagtctgaaacaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| || | ||||||| ||| |||||||||||||||||||||| |||||||||| |
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| T |
17433469 |
cagtttgtagtgggagacttgtcctcttcacatgaacacaaccattttcctcctcatggtctctgctgcaagattcaacttgatactcaatctgaaacaa |
17433568 |
T |
|
| Q |
119 |
ataaattcatgttgctcactat-atacccaac |
149 |
Q |
| |
|
| |||| ||||||||||||||| ||||||||| |
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|
| T |
17433569 |
agaaatccatgttgctcactataatacccaac |
17433600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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