View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20899_high_11 (Length: 302)

Name: NF20899_high_11
Description: NF20899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20899_high_11
NF20899_high_11
[»] scaffold0090 (1 HSPs)
scaffold0090 (87-290)||(18033-18236)
[»] chr3 (26 HSPs)
chr3 (87-276)||(24192820-24193009)
chr3 (97-278)||(9534203-9534382)
chr3 (87-278)||(14762758-14762948)
chr3 (87-276)||(20247791-20247979)
chr3 (97-279)||(23370505-23370686)
chr3 (87-276)||(38310802-38310990)
chr3 (97-289)||(16801457-16801647)
chr3 (195-289)||(41455087-41455178)
chr3 (164-279)||(24933828-24933941)
chr3 (97-276)||(55499104-55499283)
chr3 (217-278)||(18929239-18929300)
chr3 (214-278)||(17240513-17240577)
chr3 (224-279)||(13302240-13302295)
chr3 (224-279)||(13323787-13323842)
chr3 (224-279)||(12033444-12033499)
chr3 (224-279)||(13312896-13312951)
chr3 (224-279)||(17131732-17131787)
chr3 (224-279)||(51301589-51301644)
chr3 (224-279)||(14865846-14865901)
chr3 (244-279)||(23392819-23392854)
chr3 (222-276)||(16801027-16801081)
chr3 (226-279)||(10389443-10389496)
chr3 (226-279)||(10414532-10414585)
chr3 (226-279)||(10421202-10421255)
chr3 (243-279)||(2247649-2247685)
chr3 (228-284)||(10833303-10833359)
[»] scaffold0025 (1 HSPs)
scaffold0025 (87-276)||(14398-14587)
[»] scaffold0026 (2 HSPs)
scaffold0026 (87-289)||(11840-12041)
scaffold0026 (97-279)||(111561-111741)
[»] chr7 (28 HSPs)
chr7 (90-282)||(14422852-14423043)
chr7 (87-283)||(18873225-18873420)
chr7 (87-278)||(15168040-15168230)
chr7 (87-289)||(12709833-12710033)
chr7 (87-289)||(13122904-13123104)
chr7 (87-274)||(10895795-10895981)
chr7 (97-278)||(16009452-16009631)
chr7 (87-289)||(13743574-13743774)
chr7 (164-289)||(12590633-12590756)
chr7 (164-289)||(13007374-13007497)
chr7 (168-276)||(16677239-16677348)
chr7 (168-276)||(17651475-17651584)
chr7 (223-289)||(21230949-21231015)
chr7 (223-278)||(11382871-11382926)
chr7 (223-278)||(11389348-11389403)
chr7 (223-289)||(20311039-20311107)
chr7 (215-278)||(13679485-13679548)
chr7 (224-279)||(2971254-2971309)
chr7 (224-279)||(20906461-20906516)
chr7 (224-278)||(11311059-11311113)
chr7 (243-284)||(831628-831669)
chr7 (243-284)||(1196808-1196849)
chr7 (243-284)||(34958578-34958619)
chr7 (222-278)||(46625961-46626017)
chr7 (223-290)||(148619-148686)
chr7 (224-279)||(29181109-29181164)
chr7 (226-279)||(31155396-31155449)
chr7 (227-279)||(16091078-16091130)
[»] chr5 (15 HSPs)
chr5 (97-290)||(38144525-38144716)
chr5 (87-283)||(22751006-22751201)
chr5 (97-278)||(28370055-28370234)
chr5 (97-278)||(19512261-19512441)
chr5 (164-283)||(23528573-23528690)
chr5 (214-278)||(18407944-18408008)
chr5 (223-289)||(22438736-22438803)
chr5 (214-278)||(23111200-23111264)
chr5 (224-279)||(19236900-19236955)
chr5 (223-290)||(42961566-42961633)
chr5 (226-279)||(22461158-22461211)
chr5 (226-279)||(22467782-22467835)
chr5 (224-279)||(20781744-20781799)
chr5 (250-279)||(17021913-17021942)
chr5 (225-290)||(34830086-34830150)
[»] scaffold0029 (1 HSPs)
scaffold0029 (87-289)||(111746-111948)
[»] chr1 (16 HSPs)
chr1 (97-278)||(20437024-20437204)
chr1 (164-289)||(41111977-41112100)
chr1 (214-278)||(32651563-32651627)
chr1 (214-278)||(18712790-18712854)
chr1 (223-278)||(19663517-19663572)
chr1 (222-278)||(20805320-20805376)
chr1 (223-278)||(11158093-11158148)
chr1 (222-276)||(10811785-10811839)
chr1 (224-279)||(20851132-20851187)
chr1 (224-279)||(20857759-20857814)
chr1 (224-279)||(21706276-21706331)
chr1 (224-279)||(21710818-21710873)
chr1 (248-278)||(24476350-24476380)
chr1 (248-278)||(25091418-25091448)
chr1 (244-277)||(18271338-18271371)
chr1 (244-277)||(18275992-18276025)
[»] chr6 (31 HSPs)
chr6 (97-289)||(10986170-10986361)
chr6 (97-278)||(23839073-23839253)
chr6 (90-278)||(4477725-4477912)
chr6 (90-289)||(18800305-18800503)
chr6 (87-278)||(23057803-23057993)
chr6 (87-289)||(29614136-29614337)
chr6 (144-289)||(930085-930229)
chr6 (164-289)||(12168305-12168428)
chr6 (164-289)||(19287214-19287337)
chr6 (164-289)||(19785859-19785982)
chr6 (164-289)||(19878398-19878521)
chr6 (164-289)||(19884174-19884297)
chr6 (194-279)||(34639986-34640069)
chr6 (214-279)||(34646660-34646725)
chr6 (87-276)||(21565214-21565402)
chr6 (223-289)||(24512833-24512899)
chr6 (214-279)||(25469704-25469767)
chr6 (226-278)||(9187498-9187550)
chr6 (222-278)||(25348486-25348542)
chr6 (222-276)||(25598643-25598697)
chr6 (222-278)||(25397172-25397228)
chr6 (214-279)||(31252413-31252478)
chr6 (222-278)||(19471335-19471391)
chr6 (222-276)||(2286769-2286823)
chr6 (244-278)||(18659450-18659484)
chr6 (244-278)||(24441673-24441707)
chr6 (226-279)||(11288668-11288721)
chr6 (226-279)||(15458492-15458545)
chr6 (226-279)||(15465087-15465140)
chr6 (251-279)||(28288509-28288537)
chr6 (244-284)||(29415551-29415591)
[»] chr2 (17 HSPs)
chr2 (109-289)||(26583715-26583892)
chr2 (97-278)||(6483593-6483772)
chr2 (97-278)||(6487060-6487239)
chr2 (90-278)||(19661454-19661640)
chr2 (97-276)||(23878883-23879060)
chr2 (164-279)||(5706023-5706137)
chr2 (87-276)||(23089057-23089245)
chr2 (97-278)||(23101463-23101643)
chr2 (214-278)||(23265133-23265197)
chr2 (214-278)||(23280201-23280265)
chr2 (217-278)||(21908353-21908414)
chr2 (222-278)||(24661576-24661632)
chr2 (224-279)||(10577-10632)
chr2 (224-279)||(25180929-25180984)
chr2 (179-288)||(26885139-26885246)
chr2 (226-289)||(23168288-23168351)
chr2 (226-289)||(23579545-23579608)
[»] scaffold0247 (1 HSPs)
scaffold0247 (102-289)||(11221-11407)
[»] scaffold0553 (1 HSPs)
scaffold0553 (97-279)||(10195-10376)
[»] scaffold0544 (1 HSPs)
scaffold0544 (97-279)||(1525-1706)
[»] chr8 (15 HSPs)
chr8 (97-279)||(44477498-44477678)
chr8 (97-279)||(44492656-44492836)
chr8 (88-289)||(23866481-23866680)
chr8 (97-276)||(8727735-8727913)
chr8 (164-289)||(17054533-17054656)
chr8 (214-278)||(23482053-23482117)
chr8 (222-278)||(18614271-18614327)
chr8 (97-290)||(27940840-27941034)
chr8 (223-289)||(14056553-14056619)
chr8 (222-278)||(39364919-39364975)
chr8 (223-289)||(25111976-25112042)
chr8 (224-278)||(29643386-29643440)
chr8 (224-279)||(24320670-24320725)
chr8 (222-278)||(21931696-21931752)
chr8 (252-292)||(23646710-23646750)
[»] scaffold1773 (1 HSPs)
scaffold1773 (87-286)||(1044-1240)
[»] scaffold0924 (1 HSPs)
scaffold0924 (138-289)||(740-892)
[»] scaffold0006 (1 HSPs)
scaffold0006 (87-286)||(50045-50241)
[»] scaffold0058 (1 HSPs)
scaffold0058 (137-289)||(206-356)
[»] chr4 (16 HSPs)
chr4 (87-289)||(8045822-8046022)
chr4 (87-289)||(11847972-11848179)
chr4 (164-279)||(53483646-53483760)
chr4 (223-289)||(15408139-15408205)
chr4 (222-278)||(8834895-8834951)
chr4 (222-278)||(13888641-13888697)
chr4 (224-276)||(14486661-14486713)
chr4 (222-278)||(15245215-15245271)
chr4 (222-273)||(22724691-22724742)
chr4 (243-284)||(15747551-15747592)
chr4 (222-278)||(15308120-15308176)
chr4 (224-279)||(16146830-16146885)
chr4 (224-279)||(27906266-27906321)
chr4 (248-278)||(15069781-15069811)
chr4 (248-278)||(15076381-15076411)
chr4 (222-279)||(14912081-14912138)
[»] scaffold0117 (2 HSPs)
scaffold0117 (87-289)||(1887-2087)
scaffold0117 (87-289)||(8564-8764)
[»] scaffold0154 (1 HSPs)
scaffold0154 (109-289)||(30743-30923)
[»] scaffold0796 (2 HSPs)
scaffold0796 (164-284)||(1727-1845)
scaffold0796 (164-284)||(5750-5868)
[»] scaffold0456 (4 HSPs)
scaffold0456 (212-283)||(920-991)
scaffold0456 (212-283)||(8065-8136)
scaffold0456 (87-132)||(854-899)
scaffold0456 (87-132)||(7999-8044)
[»] scaffold0476 (1 HSPs)
scaffold0476 (87-276)||(3295-3484)
[»] scaffold0129 (1 HSPs)
scaffold0129 (166-285)||(45268-45386)
[»] scaffold0077 (1 HSPs)
scaffold0077 (97-276)||(3624-3802)
[»] scaffold0107 (1 HSPs)
scaffold0107 (223-289)||(40521-40587)
[»] scaffold0222 (1 HSPs)
scaffold0222 (214-278)||(16811-16875)
[»] scaffold0004 (2 HSPs)
scaffold0004 (214-278)||(116887-116951)
scaffold0004 (244-277)||(60441-60474)
[»] scaffold0310 (1 HSPs)
scaffold0310 (223-289)||(17643-17710)
[»] scaffold0019 (1 HSPs)
scaffold0019 (223-289)||(135473-135539)
[»] scaffold0461 (1 HSPs)
scaffold0461 (214-278)||(8-72)
[»] scaffold0235 (1 HSPs)
scaffold0235 (225-289)||(22582-22646)
[»] scaffold0146 (1 HSPs)
scaffold0146 (214-278)||(13623-13687)
[»] scaffold0020 (1 HSPs)
scaffold0020 (214-278)||(101928-101992)
[»] scaffold0124 (2 HSPs)
scaffold0124 (223-278)||(34276-34331)
scaffold0124 (222-279)||(35438-35495)
[»] scaffold0815 (1 HSPs)
scaffold0815 (227-289)||(1453-1515)
[»] scaffold0138 (1 HSPs)
scaffold0138 (222-278)||(12296-12352)
[»] scaffold2054 (1 HSPs)
scaffold2054 (226-289)||(717-780)
[»] scaffold0317 (1 HSPs)
scaffold0317 (215-278)||(1378-1441)
[»] scaffold0139 (1 HSPs)
scaffold0139 (223-278)||(14997-15052)
[»] scaffold0790 (1 HSPs)
scaffold0790 (250-292)||(5480-5522)
[»] scaffold0096 (1 HSPs)
scaffold0096 (222-282)||(39503-39563)
[»] scaffold0001 (1 HSPs)
scaffold0001 (224-288)||(493019-493082)
[»] scaffold0348 (1 HSPs)
scaffold0348 (224-279)||(9336-9391)
[»] scaffold0127 (1 HSPs)
scaffold0127 (224-279)||(10239-10294)
[»] scaffold0023 (1 HSPs)
scaffold0023 (224-279)||(135438-135493)
[»] scaffold1318 (1 HSPs)
scaffold1318 (224-278)||(1913-1967)
[»] scaffold0609 (1 HSPs)
scaffold0609 (214-279)||(5857-5922)
[»] scaffold0261 (1 HSPs)
scaffold0261 (224-289)||(23559-23624)
[»] scaffold0335 (1 HSPs)
scaffold0335 (222-278)||(2628-2684)
[»] scaffold0053 (1 HSPs)
scaffold0053 (224-279)||(79490-79545)
[»] scaffold0481 (1 HSPs)
scaffold0481 (232-277)||(676-721)
[»] scaffold0249 (1 HSPs)
scaffold0249 (226-279)||(13894-13947)
[»] scaffold0600 (1 HSPs)
scaffold0600 (222-278)||(732-788)
[»] scaffold0180 (1 HSPs)
scaffold0180 (229-278)||(11630-11681)
[»] scaffold0034 (1 HSPs)
scaffold0034 (224-276)||(73285-73337)
[»] scaffold0031 (2 HSPs)
scaffold0031 (222-278)||(121902-121958)
scaffold0031 (222-278)||(132778-132834)
[»] scaffold0028 (1 HSPs)
scaffold0028 (226-278)||(69749-69801)
[»] scaffold0003 (2 HSPs)
scaffold0003 (264-292)||(80293-80321)
scaffold0003 (264-292)||(100015-100043)


Alignment Details
Target: scaffold0090 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 87 - 290
Target Start/End: Original strand, 18033 - 18236
Alignment:
Q  87 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatca-tcaaccctaa 185  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||| |||    
T  18033 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgttagaatcatcattaaaccttaa 18132  T
Q  186 ccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgc 285  Q
    ||||||||||||||||| |||||||  ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18133 ccctcaatttattttcctaaagcta-agcaattaggtcaattttcaaaaattatagattatgattattgagagatagtctcacccttaccttagttttgc 18231  T
Q  286 agaat 290  Q
    |||||    
T  18232 agaat 18236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 132; Significance: 1e-68; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 87 - 276
Target Start/End: Original strand, 24192820 - 24193009
Alignment:
Q  87 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 184  Q
    |||||||| ||||| |||||||||||||||| |||||||||||||| |||||||||||||| ||||||| ||||||| |||||||||||||||| |||||    
T  24192820 cagcaacagcatagattaagttttcattctgaacatcacattacaa-cagaattaacatgatcattacccatttcccttcagaatcatcatcaaacccta 24192918  T
Q  185 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 276  Q
    ||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24192919 accctcaatttatcttccaaaaactat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 24193009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 97 - 278
Target Start/End: Original strand, 9534203 - 9534382
Alignment:
Q  97 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaattt 195  Q
    |||| |||||||||||||||  |||| ||||||||| |||||||||||||| || ||||  ||||  |||||||||||||||| ||||||||||||||||    
T  9534203 atagattaagttttcattctaaacattacattacaa-cagaattaacatgatcaatacccattccactcagaatcatcatcaaaccctaaccctcaattt 9534301  T
Q  196 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9534302 attttccaaaa-ctat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 9534382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 87 - 278
Target Start/End: Complemental strand, 14762948 - 14762758
Alignment:
Q  87 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 184  Q
    ||||| ||||| || |||||||||||||||| |||| | |||||||  ||||||||||||| ||||||| ||||||| |||||||||||||||| |||||    
T  14762948 cagcagcaacaaagattaagttttcattctgaacattatattacaag-agaattaacatgatcattacccatttcccttcagaatcatcatcaaacccta 14762850  T
Q  185 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  14762849 accctcaatttatcttccaaaa-ctat-gcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 14762758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 87 - 276
Target Start/End: Complemental strand, 20247979 - 20247791
Alignment:
Q  87 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 184  Q
    ||||| ||||| || |||||||||||||||| |||| | |||||||  | ||||||||||| ||||||| ||||||| |||||||||||||||| |||||    
T  20247979 cagcagcaacaaagattaagttttcattctgaacattatattacaagaa-aattaacatgatcattacccatttcccttcagaatcatcatcaaacccta 20247881  T
Q  185 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 276  Q
    ||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20247880 accctcaatttatcttccaaaa-ctat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 20247791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 97 - 279
Target Start/End: Complemental strand, 23370686 - 23370505
Alignment:
Q  97 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaattt 195  Q
    |||| |||||||||||||||  |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||||||||||| ||||||||| ||||||    
T  23370686 atagattaagttttcattctaaacattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaacccacaattt 23370588  T
Q  196 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    || |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  23370587 atcttccaaaaactat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttag 23370505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 87 - 276
Target Start/End: Complemental strand, 38310990 - 38310802
Alignment:
Q  87 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 184  Q
    ||||| ||||| || |||||||||||||||| |||| | |||||||  ||||||||||||| ||||||| ||||||| |||||||||||||||| |||||    
T  38310990 cagcagcaacaaagattaagttttcattctgaacattatattacaag-agaattaacatgatcattacccatttcccttcagaatcatcatcaaacccta 38310892  T
Q  185 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 276  Q
    ||||||||||||| |||||||| |||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||    
T  38310891 accctcaatttatcttccaaaa-ctat-gcaattaggtcaatattcagaaattatagattatgattatcgagagatagtctcacccttacct 38310802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 97 - 289
Target Start/End: Complemental strand, 16801647 - 16801457
Alignment:
Q  97 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattac-catttcccgtcagaatcatcatcaaccctaaccctcaattt 195  Q
    ||||||||||  ||||||||  |||||||||||||  || | ||||||||| |||||| |  ||| | ||| |||||||||||||||||||| |||||||    
T  16801647 ataggttaagaattcattctaaacatcacattacag-catatttaacatgatcattacaccattctcctcaaaatcatcatcaaccctaaccttcaattt 16801549  T
Q  196 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 289  Q
      | | |||||||||  ||||| |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||    
T  16801548 tatcttcaaaagctaa-gcaatcaggtcaattttcagaaattatatat-atgattattgagagatagtctcacccttaccttagttttgcagaa 16801457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 195 - 289
Target Start/End: Complemental strand, 41455178 - 41455087
Alignment:
Q  195 tattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 289  Q
    |||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41455178 tattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 41455087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 164 - 279
Target Start/End: Complemental strand, 24933941 - 24933828
Alignment:
Q  164 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatag 262  Q
    |||||||||||||||| ||||||   |||  ||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  24933941 tcagaatcatcatcaaaccctaattttcatattattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 24933845  T
Q  263 tctcacccttaccttag 279  Q
    |||||||||||||||||    
T  24933844 tctcacccttaccttag 24933828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 97 - 276
Target Start/End: Complemental strand, 55499283 - 55499104
Alignment:
Q  97 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatc-aaccctaaccctcaattt 195  Q
    |||| ||||| |||||||| | |||||||||||||| || ||||||||||| |||||||  ||||| |||||||||||||| |||||||||||||||||     
T  55499283 atagattaagatttcattccgaacatcacattacaa-cataattaacatgatcattacccattcccctcagaatcatcatcaaaccctaaccctcaatt- 55499186  T
Q  196 attttccaaaagctattgcaattaggtcaatttt-cagaaattatagattat-gattattgagagatagtctcacccttacct 276  Q
     || |||  ||| |   ||| ||||||||||||| | ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  55499185 -ttatcctcaaggttaagcagttaggtcaattttcccgaaattacatattatctattaatgagagatagtctcacccttacct 55499104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 18929239 - 18929300
Alignment:
Q  217 ttaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    |||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  18929239 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 18929300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 17240577 - 17240513
Alignment:
Q  214 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||| ||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  17240577 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 17240513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 279
Target Start/End: Complemental strand, 13302295 - 13302240
Alignment:
Q  224 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||| | |||||||||||||| ||||| |||||||||||||||||    
T  13302295 aattttcagaaattacatattatgattattgaaagataatctcacccttaccttag 13302240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 224 - 279
Target Start/End: Complemental strand, 13323842 - 13323787
Alignment:
Q  224 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||| | |||||||||||||| ||||| |||||||||||||||||    
T  13323842 aattttcagaaattacatattatgattattgaaagataatctcacccttaccttag 13323787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 279
Target Start/End: Complemental strand, 12033499 - 12033444
Alignment:
Q  224 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  12033499 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 12033444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 279
Target Start/End: Complemental strand, 13312951 - 13312896
Alignment:
Q  224 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    |||||||| |||||| | |||||||||||||| ||||| |||||||||||||||||    
T  13312951 aattttcaaaaattacatattatgattattgaaagataatctcacccttaccttag 13312896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 279
Target Start/End: Original strand, 17131732 - 17131787
Alignment:
Q  224 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  17131732 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 17131787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 279
Target Start/End: Original strand, 51301589 - 51301644
Alignment:
Q  224 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||| | |||||||||||||  ||||| |||||||||||||||||    
T  51301589 aattttcagaaattacatattatgattattggaagataatctcacccttaccttag 51301644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 279
Target Start/End: Original strand, 14865846 - 14865901
Alignment:
Q  224 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  14865846 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttag 14865901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 279
Target Start/End: Complemental strand, 23392854 - 23392819
Alignment:
Q  244 tatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||| ||||||||||||||||||||    
T  23392854 tatgattattgagagttagtctcacccttaccttag 23392819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 276
Target Start/End: Original strand, 16801027 - 16801081
Alignment:
Q  222 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 276  Q
    ||||||||||||| ||||| ||||  || |||||||| |||||||||||||||||    
T  16801027 tcaattttcagaagttatatattacaatcattgagagttagtctcacccttacct 16801081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 10389496 - 10389443
Alignment:
Q  226 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||| ||||| || ||||| ||||| || ||||||||||||||    
T  10389496 ttttcagaaattatacattataatcattgaaagataatcccacccttaccttag 10389443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 10414585 - 10414532
Alignment:
Q  226 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||| ||||| || ||||| ||||| || ||||||||||||||    
T  10414585 ttttcagaaattatacattataatcattgaaagataatcccacccttaccttag 10414532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 10421255 - 10421202
Alignment:
Q  226 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||| ||||| || ||||| ||||| || ||||||||||||||    
T  10421255 ttttcagaaattatacattataatcattgaaagataatcccacccttaccttag 10421202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 243 - 279
Target Start/End: Complemental strand, 2247685 - 2247649
Alignment:
Q  243 ttatgattattgagagatagtctcacccttaccttag 279  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  2247685 ttataattattgagagttagtctcacccttaccttag 2247649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 228 - 284
Target Start/End: Complemental strand, 10833359 - 10833303
Alignment:
Q  228 ttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttg 284  Q
    ||||||| ||||| | |||||||| |||  | |||||||||||||||||||||||||    
T  10833359 ttcagaatttatacactatgattactgaatgttagtctcacccttaccttagttttg 10833303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0025 (Bit Score: 128; Significance: 3e-66; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 87 - 276
Target Start/End: Complemental strand, 14587 - 14398
Alignment:
Q  87 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 184  Q
    |||||||| ||||| |||||||||||||| | |||||||||||||| |||||||||||||| ||||||| ||||||| |||||||||||||||| |||||    
T  14587 cagcaacagcatagattaagttttcattcggaacatcacattacaa-cagaattaacatgatcattacccatttcccttcagaatcatcatcaaacccta 14489  T
Q  185 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 276  Q
    ||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14488 accctcaatttatcttccaaaaactat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 14398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 87 - 289
Target Start/End: Complemental strand, 12041 - 11840
Alignment:
Q  87 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 184  Q
    ||||||||||| || |||||||||||||||| | || | |||||||  ||||||||||||| ||||||| ||||||| |||||||||||||||| |||||    
T  12041 cagcaacaacaaagattaagttttcattctgaagattatattacaag-agaattaacatgatcattacccatttcccttcagaatcatcatcaaacccta 11943  T
Q  185 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttg 284  Q
    || ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11942 actctcaatttattttccaaaa-ctat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttg 11845  T
Q  285 cagaa 289  Q
    |||||    
T  11844 cagaa 11840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 97 - 279
Target Start/End: Original strand, 111561 - 111741
Alignment:
Q  97 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaattt 195  Q
    |||| |||||||||||||||  |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||||||||||| ||||||||||||||||    
T  111561 atagattaagttttcattctaaacattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaattt 111659  T
Q  196 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  111660 attttccaaaa-ctat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 111741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 90 - 282
Target Start/End: Original strand, 14422852 - 14423043
Alignment:
Q  90 caacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccc 188  Q
    |||||| |||| |||||||||||||||  |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||||||||||| |||||||||    
T  14422852 caacaatatagattaagttttcattctaaacattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccc 14422950  T
Q  189 tcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttt 282  Q
    ||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14422951 tcaatttatcttccaaaaactat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttt 14423043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 87 - 283
Target Start/End: Original strand, 18873225 - 18873420
Alignment:
Q  87 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 184  Q
    ||||| ||||| || |||||||||||||||| |||| | |||||||  ||||||||||||| ||||||| ||||||| |||||||||||||||| |||||    
T  18873225 cagcagcaacaaagattaagttttcattctgaacattatattacaag-agaattaacatgatcattacccatttcccttcagaatcatcatcaaacccta 18873323  T
Q  185 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagtttt 283  Q
    ||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  18873324 accctcaatttatcttccaaaa-ctat-gcaattaggtcaattttcagaaattatagattatgattatcgagagaaagtctcacccttaccttagtttt 18873420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 87 - 278
Target Start/End: Original strand, 15168040 - 15168230
Alignment:
Q  87 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 184  Q
    ||||| ||||| || |||||||||||||||| |||| | |||||||  ||||||||||||| ||||||| ||||||| |||||||||||||||| |||||    
T  15168040 cagcagcaacaaagattaagttttcattctgaacattatattacaag-agaattaacatgatcattacccatttcccttcagaatcatcatcaaacccta 15168138  T
Q  185 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  15168139 accctcaatttatcttccaaaa-ctat-gcaattaggtcaattttcagaaattatagattatgattatcgagagatagtctcacccttacctta 15168230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 87 - 289
Target Start/End: Complemental strand, 12710033 - 12709833
Alignment:
Q  87 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 184  Q
    ||||||||||| || ||||||||  |||||| |||| | |||||||| ||||||||||||| ||||||| ||||| | ||| |||||||||||| |||||    
T  12710033 cagcaacaaca-agattaagtttatattctgaacattatattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaacccta 12709935  T
Q  185 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttg 284  Q
    |||||||||||||||||||||| |||| |||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  12709934 accctcaatttattttccaaaa-ctat-gcaattaggtcaattt-caggaattataaattatgattattgagagatagtctcacccttaccttagttttg 12709838  T
Q  285 cagaa 289  Q
    |||||    
T  12709837 cagaa 12709833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 87 - 289
Target Start/End: Complemental strand, 13123104 - 13122904
Alignment:
Q  87 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 184  Q
    ||||||||||| || ||||||||  |||||| |||| | |||||||| ||||||||||||| ||||||| ||||| | ||| |||||||||||| |||||    
T  13123104 cagcaacaaca-agattaagtttatattctgaacattatattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaacccta 13123006  T
Q  185 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttg 284  Q
    |||||||||||||||||||||| |||| |||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13123005 accctcaatttattttccaaaa-ctat-gcaattaggtcaattt-caggaattataaattatgattattgagagatagtctcacccttaccttagttttg 13122909  T
Q  285 cagaa 289  Q
    |||||    
T  13122908 cagaa 13122904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 87 - 274
Target Start/End: Complemental strand, 10895981 - 10895795
Alignment:
Q  87 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaa 185  Q
    ||||| ||||| || |||||||||||||||| |||| | |||||||  ||||||||||||| || ||||  ||||| |||||||||||||||| ||||||    
T  10895981 cagcagcaacaaagattaagttttcattctgaacattatattacaag-agaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaa 10895883  T
Q  186 ccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttac 274  Q
    ||| |||||||| |||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  10895882 cccacaatttatcttccaaaaactat-gcaattaggtcaattttcaaaaattatagattatgattattgagagatagtctcacccttac 10895795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 97 - 278
Target Start/End: Original strand, 16009452 - 16009631
Alignment:
Q  97 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaaccct-aaccctcaattt 195  Q
    |||| |||||||||||||||  |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||||||||||| ||| ||||| ||||||    
T  16009452 atagattaagttttcattctaaacattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccttaacccacaattt 16009550  T
Q  196 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    || |||||||| |   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16009551 atcttccaaaacca--tgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 16009631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 87 - 289
Target Start/End: Original strand, 13743574 - 13743774
Alignment:
Q  87 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 184  Q
    |||||| ||||||| |||||| |||| |||| ||| || | |||||  | ||||||||||| ||||||| ||||| | ||| |||||||||||| |||||    
T  13743574 cagcaataacatagattaagtcttcaatctgaacagcataatacaagaa-aattaacatgatcattacccatttctcttcataatcatcatcaaacccta 13743672  T
Q  185 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttg 284  Q
    |||||||||||||||||||||| |||| |||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13743673 accctcaatttattttccaaaa-ctat-gcaattaggtcaattt-caggaattataaattatgattattgagagatagtctcacccttaccttagttttg 13743769  T
Q  285 cagaa 289  Q
    |||||    
T  13743770 cagaa 13743774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 164 - 289
Target Start/End: Complemental strand, 12590756 - 12590633
Alignment:
Q  164 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatag 262  Q
    |||||||||||||||| |||||||  |||  ||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12590756 tcagaatcatcatcaaaccctaactttcatattattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 12590660  T
Q  263 tctcacccttaccttagttttgcagaa 289  Q
    |||||||||||||||||||||||||||    
T  12590659 tctcacccttaccttagttttgcagaa 12590633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 13007374 - 13007497
Alignment:
Q  164 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatag 262  Q
    |||||||||||||||| |||||||  |||  ||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  13007374 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 13007470  T
Q  263 tctcacccttaccttagttttgcagaa 289  Q
    |||||||||||||||||||||||||||    
T  13007471 tctcacccttaccttagttttgcagaa 13007497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 168 - 276
Target Start/End: Original strand, 16677239 - 16677348
Alignment:
Q  168 aatcatcatcaa-ccctaaccctcaattt-attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtct 265  Q
    |||||||||||| |||||||||| ||||| || |||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  16677239 aatcatcatcaaaccctaacccttaattttatcttccaaaaactat-gcaattaggtcaatttttagaaattatagattatgattattgagagatagtct 16677337  T
Q  266 cacccttacct 276  Q
    |||||||||||    
T  16677338 cacccttacct 16677348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 168 - 276
Target Start/End: Original strand, 17651475 - 17651584
Alignment:
Q  168 aatcatcatcaa-ccctaaccctcaattt-attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtct 265  Q
    |||||||||||| |||||||||| ||||| || |||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17651475 aatcatcatcaaaccctaacccttaattttatcttccaaaaactat-gcaattaggtcaatttttagaaattatagattatgattattgagagatagtct 17651573  T
Q  266 cacccttacct 276  Q
    |||||||||||    
T  17651574 cacccttacct 17651584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 21231015 - 21230949
Alignment:
Q  223 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 289  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||    
T  21231015 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgcagaa 21230949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 11382926 - 11382871
Alignment:
Q  223 caattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11382926 caattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11382871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 11389403 - 11389348
Alignment:
Q  223 caattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  11389403 caattttcagaaattatatattatgattattgagagatagtctcacccttacctta 11389348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 20311107 - 20311039
Alignment:
Q  223 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttag--ttttgcagaa 289  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||  ||||||||||    
T  20311107 caattttcagaaattatacgttatgattattgagagatagtctcacccttaccttagatttttgcagaa 20311039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 13679485 - 13679548
Alignment:
Q  215 aattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    |||||| |||||||||| |||||||| || ||||| ||||| ||||||||||||||||||||||    
T  13679485 aattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 13679548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 279
Target Start/End: Original strand, 2971254 - 2971309
Alignment:
Q  224 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  2971254 aattttcagaaattataaattatgactattgaaagataatcccacccttaccttag 2971309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 279
Target Start/End: Complemental strand, 20906516 - 20906461
Alignment:
Q  224 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  20906516 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20906461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 278
Target Start/End: Original strand, 11311059 - 11311113
Alignment:
Q  224 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    |||||| ||||||| || | ||| |||||||||||||||||||||||||||||||    
T  11311059 aatttttagaaattctacactattattattgagagatagtctcacccttacctta 11311113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 831669 - 831628
Alignment:
Q  243 ttatgattattgagagatagtctcacccttaccttagttttg 284  Q
    |||| ||||||||||| |||||||||||||||||||||||||    
T  831669 ttataattattgagagttagtctcacccttaccttagttttg 831628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 1196849 - 1196808
Alignment:
Q  243 ttatgattattgagagatagtctcacccttaccttagttttg 284  Q
    |||| ||||||||||| |||||||||||||||||||||||||    
T  1196849 ttataattattgagagttagtctcacccttaccttagttttg 1196808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 284
Target Start/End: Original strand, 34958578 - 34958619
Alignment:
Q  243 ttatgattattgagagatagtctcacccttaccttagttttg 284  Q
    |||| ||||||||||| |||||||||||||||||||||||||    
T  34958578 ttataattattgagagttagtctcacccttaccttagttttg 34958619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 46625961 - 46626017
Alignment:
Q  222 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||||| ||||||||| ||||| || |||||||| |||||||||||||| ||||    
T  46625961 tcaattttccgaaattatatattataatcattgagagttagtctcacccttatctta 46626017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 223 - 290
Target Start/End: Original strand, 148619 - 148686
Alignment:
Q  223 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaat 290  Q
    |||||||||||||  ||| ||||| || |||||  | ||| |||||||||||||||||||||||||||    
T  148619 caattttcagaaaccatatattataatcattgaaggttagcctcacccttaccttagttttgcagaat 148686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 279
Target Start/End: Complemental strand, 29181164 - 29181109
Alignment:
Q  224 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  29181164 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttag 29181109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 31155396 - 31155449
Alignment:
Q  226 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||| ||||| || ||||| ||||| || ||||||||||||||    
T  31155396 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttag 31155449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 279
Target Start/End: Original strand, 16091078 - 16091130
Alignment:
Q  227 tttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    |||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  16091078 tttcagaaattacatattatgactattgaaagataatcccacccttaccttag 16091130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 120; Significance: 2e-61; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 97 - 290
Target Start/End: Complemental strand, 38144716 - 38144525
Alignment:
Q  97 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaattt 195  Q
    |||| |||||||||||||||  |||| |||||||||  ||||||||||||| || ||||  ||||| |||||||||||||||| ||||||||||||||||    
T  38144716 atagattaagttttcattctaaacattacattacaat-agaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaattt 38144618  T
Q  196 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaat 290  Q
    |||||||||||  |  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38144617 attttccaaaa--ttatgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaat 38144525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 87 - 283
Target Start/End: Original strand, 22751006 - 22751201
Alignment:
Q  87 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 184  Q
    ||||| ||||| || |||||||||||||||| |||| | |||||||  ||||||||||||| ||||||| ||||||| |||||||||||||||| |||||    
T  22751006 cagcagcaacaaagattaagttttcattctgaacattatattacaag-agaattaacatgatcattacccatttcccttcagaatcatcatcaaacccta 22751104  T
Q  185 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagtttt 283  Q
    ||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  22751105 accctcaatttatcttccaaaa-ctat-gcaattaggtcaattttcagaaattatagattatgattatcgagagaaagtctcacccttaccttagtttt 22751201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 97 - 278
Target Start/End: Complemental strand, 28370234 - 28370055
Alignment:
Q  97 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaattt 195  Q
    |||| |||||||||||||||  |||| || |||||| |||||||||||||| || ||||  ||||| ||| |||||||||||| ||||||||||||||||    
T  28370234 atagattaagttttcattctaaacattacgttacaa-cagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaattt 28370136  T
Q  196 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28370135 attttccaaaa-ctat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 28370055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 97 - 278
Target Start/End: Original strand, 19512261 - 19512441
Alignment:
Q  97 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaattt 195  Q
    |||| |||||||||||||||  |||| || ||||||  ||||||||||||| || ||||  ||||| ||| |||||||||||| ||||||||||||||||    
T  19512261 atagattaagttttcattctaaacattacgttacaat-agaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaattt 19512359  T
Q  196 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    || |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19512360 atcttccaaaaactat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 19512441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 164 - 283
Target Start/End: Original strand, 23528573 - 23528690
Alignment:
Q  164 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatag 262  Q
    |||||||||||||||| |||||||  |||  ||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  23528573 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 23528669  T
Q  263 tctcacccttaccttagtttt 283  Q
    |||||||||||||||||||||    
T  23528670 tctcacccttaccttagtttt 23528690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 18408008 - 18407944
Alignment:
Q  214 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  18408008 caattagatcaattttcagaaattatatattatgattattgagagatagtctcacccttacctta 18407944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 22438803 - 22438736
Alignment:
Q  223 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttag-ttttgcagaa 289  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  22438803 caattttcagaaattatacattatgattattgagagatagtctcacccttaccttagattttgcagaa 22438736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 23111264 - 23111200
Alignment:
Q  214 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  23111264 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23111200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 279
Target Start/End: Original strand, 19236900 - 19236955
Alignment:
Q  224 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  19236900 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 19236955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 223 - 290
Target Start/End: Original strand, 42961566 - 42961633
Alignment:
Q  223 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaat 290  Q
    |||||||||||||| ||| ||||| || |||||  | ||| |||||||||||||||||||||||||||    
T  42961566 caattttcagaaatcatatattataatcattgaaggttagcctcacccttaccttagttttgcagaat 42961633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 22461158 - 22461211
Alignment:
Q  226 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  22461158 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttag 22461211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 22467782 - 22467835
Alignment:
Q  226 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  22467782 ttttcagaaattatatattatgactattgaaagataatcccacccttaccttag 22467835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 279
Target Start/End: Original strand, 20781744 - 20781799
Alignment:
Q  224 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||| ||| ||||| |||||||| ||||| || ||||||||||||||    
T  20781744 aattttcagaaatcatatattataattattgaaagataatcccacccttaccttag 20781799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 279
Target Start/End: Complemental strand, 17021942 - 17021913
Alignment:
Q  250 tattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||||||||||||||||||    
T  17021942 tattgagagatagtctcacccttaccttag 17021913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 290
Target Start/End: Original strand, 34830086 - 34830150
Alignment:
Q  225 attttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaat 290  Q
    |||||||||||||||| ||||  |||||||| ||||| || ||||||||||||||  |||||||||    
T  34830086 attttcagaaattatacattaa-attattgaaagataatcccacccttaccttagaattgcagaat 34830150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 87 - 289
Target Start/End: Original strand, 111746 - 111948
Alignment:
Q  87 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 184  Q
    ||||| ||||| || |||||||||||||||| |||| | |||||||  ||||||||||||| ||||||| ||||||| |||||||||||||||| |||||    
T  111746 cagcagcaacaaagattaagttttcattctgaacattatattacaag-agaattaacatgatcattacccatttcccttcagaatcatcatcaaacccta 111844  T
Q  185 accctcaatttattttccaaaagctattgcaattaggtcaatttt-cagaaattatagattatgattattgagagatagtctcacccttaccttagtttt 283  Q
    ||||||||||||| |||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  111845 accctcaatttatcttccaaaa-ctat-gcaattaggtcaatttttcagaaattatagattatgattattgagagatagtctcacccttaccttagtttt 111942  T
Q  284 gcagaa 289  Q
    ||||||    
T  111943 gcagaa 111948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 97 - 278
Target Start/End: Complemental strand, 20437204 - 20437024
Alignment:
Q  97 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaattt 195  Q
    |||| |||||||||||||||| |||| ||||||||| || ||||||||||| || ||||  ||||| |||||||||||||||| ||||||||||||||||    
T  20437204 atagattaagttttcattctgaacattacattacaa-cataattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaattt 20437106  T
Q  196 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    || |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20437105 atcttccaaaaactat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 20437024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 41111977 - 41112100
Alignment:
Q  164 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatag 262  Q
    |||||||||||||||| |||||||  |||  ||||||| ||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  41111977 tcagaatcatcatcaaaccctaactttcatcttatttttcaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 41112073  T
Q  263 tctcacccttaccttagttttgcagaa 289  Q
    |||||||||||||||||||||||||||    
T  41112074 tctcacccttaccttagttttgcagaa 41112100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 32651563 - 32651627
Alignment:
Q  214 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  32651563 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 32651627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 18712790 - 18712854
Alignment:
Q  214 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||    
T  18712790 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccatacctta 18712854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 19663572 - 19663517
Alignment:
Q  223 caattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  19663572 caattttcagaaattatatactatgattatcgagagatagtctcacccttacctta 19663517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 20805320 - 20805376
Alignment:
Q  222 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||    
T  20805320 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 20805376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 278
Target Start/End: Original strand, 11158093 - 11158148
Alignment:
Q  223 caattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    |||||||||||||||||| |||| ||| |||||||| |||||||||||||||||||    
T  11158093 caattttcagaaattatatattaagatcattgagagttagtctcacccttacctta 11158148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 222 - 276
Target Start/End: Complemental strand, 10811839 - 10811785
Alignment:
Q  222 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 276  Q
    |||||||||||||||| || | ||| |||||||||||||||||||||||||||||    
T  10811839 tcaattttcagaaattctacactattattattgagagatagtctcacccttacct 10811785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 279
Target Start/End: Complemental strand, 20851187 - 20851132
Alignment:
Q  224 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  20851187 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20851132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 279
Target Start/End: Complemental strand, 20857814 - 20857759
Alignment:
Q  224 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  20857814 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 20857759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 279
Target Start/End: Original strand, 21706276 - 21706331
Alignment:
Q  224 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  21706276 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 21706331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 279
Target Start/End: Original strand, 21710818 - 21710873
Alignment:
Q  224 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  21710818 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 21710873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 278
Target Start/End: Original strand, 24476350 - 24476380
Alignment:
Q  248 attattgagagatagtctcacccttacctta 278  Q
    |||||||||||||||||||||||||||||||    
T  24476350 attattgagagatagtctcacccttacctta 24476380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 278
Target Start/End: Complemental strand, 25091448 - 25091418
Alignment:
Q  248 attattgagagatagtctcacccttacctta 278  Q
    |||||||||||||||||||||||||||||||    
T  25091448 attattgagagatagtctcacccttacctta 25091418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 277
Target Start/End: Original strand, 18271338 - 18271371
Alignment:
Q  244 tatgattattgagagatagtctcacccttacctt 277  Q
    ||||||||||||||| ||||||||||||||||||    
T  18271338 tatgattattgagagttagtctcacccttacctt 18271371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 277
Target Start/End: Original strand, 18275992 - 18276025
Alignment:
Q  244 tatgattattgagagatagtctcacccttacctt 277  Q
    ||||||||||||||| ||||||||||||||||||    
T  18275992 tatgattattgagagttagtctcacccttacctt 18276025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 114; Significance: 8e-58; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 97 - 289
Target Start/End: Complemental strand, 10986361 - 10986170
Alignment:
Q  97 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaattt 195  Q
    |||| |||||||||||||||| |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||||||||||| ||||||||||||||||    
T  10986361 atagattaagttttcattctgaacattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccctcaattt 10986263  T
Q  196 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 289  Q
    || |||||||| |||| ||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||  ||||||||    
T  10986262 atcttccaaaaactat-gcaattaggtcaatttttagaaattatagattatgattattgaaagatagtctcacccttaccttagaattgcagaa 10986170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 97 - 278
Target Start/End: Original strand, 23839073 - 23839253
Alignment:
Q  97 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaattt 195  Q
    |||| |||||||||||||||| |||| ||||||||| |||||||||||||| || ||||  ||||| | |||||||||||||| ||||||||||||||||    
T  23839073 atagattaagttttcattctgaacattacattacaa-cagaattaacatgatcaatacccattccccttagaatcatcatcaaaccctaaccctcaattt 23839171  T
Q  196 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    || |||||||  |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23839172 atcttccaaacactat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 23839253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 90 - 278
Target Start/End: Original strand, 4477725 - 4477912
Alignment:
Q  90 caacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccc 188  Q
    |||||| |||| |||||||||||||||  |||| ||||||||| |||||||| ||||| || ||||  ||||| |||||||||||||||| |||||||||    
T  4477725 caacaatatagattaagttttcattctaaacattacattacaa-cagaattagcatgatcaatacccattcccctcagaatcatcatcaaaccctaaccc 4477823  T
Q  189 tcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
     |||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4477824 acaatttatcttccaaaaactat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 4477912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 90 - 289
Target Start/End: Original strand, 18800305 - 18800503
Alignment:
Q  90 caacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccc 188  Q
    |||||| |||| ||||| ||||||| || |||||||||||||| |||||||||||||| ||||||   |||||  ||||||||||||||| |||||||||    
T  18800305 caacaatatagattaagatttcattttgaacatcacattacaa-cagaattaacatgatcattactcattccctccagaatcatcatcaaaccctaaccc 18800403  T
Q  189 tcaatt-tattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcag 287  Q
    |||||| |||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18800404 tcaattctattttccaaaa-ctaa-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacattagttttgcag 18800501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 87 - 278
Target Start/End: Original strand, 23057803 - 23057993
Alignment:
Q  87 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 184  Q
    ||||| ||||| || |||||||||||||||| |||| | |||||||  ||||||||||||| ||||||| ||||||| |||||||||||||||| |||||    
T  23057803 cagcagcaacaaagattaagttttcattctgaacattatattacaag-agaattaacatgatcattacccatttcccttcagaatcatcatcaaacccta 23057901  T
Q  185 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||||||||| |||||||| |||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  23057902 accctcaatttatcttccaaaa-ctat-gcaattaggtcaattttcaggaattatagattatgattatcgagagatagtctcacccttacctta 23057993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 87 - 289
Target Start/End: Complemental strand, 29614337 - 29614136
Alignment:
Q  87 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 184  Q
    ||||||||||| || |||||||||||||||  ||||  || |||||  ||||||||||||| ||||||| ||||||| ||| |||||||||||| |||||    
T  29614337 cagcaacaacaaagattaagttttcattctaaacatt-caatacaag-agaattaacatgatcattacccatttcccttcataatcatcatcaaacccta 29614240  T
Q  185 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttg 284  Q
    |||||||||||||||| | |||  ||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29614239 accctcaatttatttttccaaaattat-gcaactaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttg 29614141  T
Q  285 cagaa 289  Q
    |||||    
T  29614140 cagaa 29614136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 144 - 289
Target Start/End: Complemental strand, 930229 - 930085
Alignment:
Q  144 atgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattataga 242  Q
    |||| |||||||  ||||| |||||| ||||||||| ||||||||||||||||||||| ||||| ||||  |||||||||||||||||||||| ||||||    
T  930229 atgatcattacccattcccttcagaaacatcatcaaaccctaaccctcaatttatttttcaaaa-ctata-caattaggtcaattttcagaaactataga 930132  T
Q  243 ttatgattattgagagatagtctcacccttaccttagttttgcagaa 289  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  930131 ttatgattattgagagatagtctcacccttaccttagttttgcagaa 930085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 12168305 - 12168428
Alignment:
Q  164 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatag 262  Q
    |||||||||||||||| |||||||  |||  ||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  12168305 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 12168401  T
Q  263 tctcacccttaccttagttttgcagaa 289  Q
    |||||||||||||||||||||||||||    
T  12168402 tctcacccttaccttagttttgcagaa 12168428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 19287214 - 19287337
Alignment:
Q  164 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatag 262  Q
    |||||||||||||||| |||||||  |||  ||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19287214 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 19287310  T
Q  263 tctcacccttaccttagttttgcagaa 289  Q
    |||||||||||||||||||||||||||    
T  19287311 tctcacccttaccttagttttgcagaa 19287337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 164 - 289
Target Start/End: Complemental strand, 19785982 - 19785859
Alignment:
Q  164 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatag 262  Q
    |||||||||||||||| |||||||  ||| |||||||||||||| ||||| ||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  19785982 tcagaatcatcatcaaaccctaactttcattttattttccaaaa-ctatt-caactaggtcaattt-cagaaattatagattatgattattgagagatag 19785886  T
Q  263 tctcacccttaccttagttttgcagaa 289  Q
    |||||||||||||||||||||||||||    
T  19785885 tctcacccttaccttagttttgcagaa 19785859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 19878398 - 19878521
Alignment:
Q  164 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatag 262  Q
    |||||||||||||||| |||||||  |||  ||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19878398 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 19878494  T
Q  263 tctcacccttaccttagttttgcagaa 289  Q
    |||||||||||||||||||||||||||    
T  19878495 tctcacccttaccttagttttgcagaa 19878521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 19884174 - 19884297
Alignment:
Q  164 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatag 262  Q
    |||||||||||||||| |||||||  |||  ||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||    
T  19884174 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctatt-caattaggtcaattt-cagaaattatagattatgattattgagagatag 19884270  T
Q  263 tctcacccttaccttagttttgcagaa 289  Q
    ||||||||| |||||||||||||||||    
T  19884271 tctcaccctaaccttagttttgcagaa 19884297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 194 - 279
Target Start/End: Complemental strand, 34640069 - 34639986
Alignment:
Q  194 ttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34640069 ttattttccaaaa-ctatt-caattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttaccttag 34639986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 214 - 279
Target Start/End: Complemental strand, 34646725 - 34646660
Alignment:
Q  214 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  34646725 caattaggtcaattttcagaaattatagattaagattattgagagatagtctcacccttaccttag 34646660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 87 - 276
Target Start/End: Complemental strand, 21565402 - 21565214
Alignment:
Q  87 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatc-aaccctaa 185  Q
    ||||||||  |||| ||||| |||||||| | || ||||||||||| || ||||||||||| |||||||  ||||| | |||||||||||| ||||||||    
T  21565402 cagcaacagtatagattaagatttcattccgaacgtcacattacaa-cataattaacatgatcattacccattccccttagaatcatcatcaaaccctaa 21565304  T
Q  186 ccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattat-gattattgagagatagtctcacccttacct 276  Q
    |||||||||  || |||  ||| |   |||||||||||||||||| ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  21565303 ccctcaatt--ttatcctcaaggttaagcaattaggtcaattttccgaaattaaatattatctattaatgagagatagtctcacccttacct 21565214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 24512899 - 24512833
Alignment:
Q  223 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 289  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||| ||||||| |||||||||    
T  24512899 caattttcagaaattatatactatgattattgagagatagtctcaccctcaccttagatttgcagaa 24512833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 214 - 279
Target Start/End: Complemental strand, 25469767 - 25469704
Alignment:
Q  214 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25469767 caattaggtcaattt-cagaa-ttatagattatgattattgagagatagtctcacccttaccttag 25469704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 9187498 - 9187550
Alignment:
Q  226 ttttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  9187498 ttttcagaaattatgtattaagattattgagagatagtctcacccttacctta 9187550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 25348486 - 25348542
Alignment:
Q  222 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    |||||||||||||||| || | ||| |||||||||||||||||||||||||||||||    
T  25348486 tcaattttcagaaattctatactattattattgagagatagtctcacccttacctta 25348542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 222 - 276
Target Start/End: Original strand, 25598643 - 25598697
Alignment:
Q  222 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 276  Q
    |||||||||||||| |||| |||||||| |||||||| |||||||||||||||||    
T  25598643 tcaattttcagaaaatatatattatgatcattgagagttagtctcacccttacct 25598697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 25397172 - 25397228
Alignment:
Q  222 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  25397172 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacctta 25397228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 279
Target Start/End: Original strand, 31252413 - 31252478
Alignment:
Q  214 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||| | ||||||||||||||||| ||||| || ||| | ||||| |||||||||||||||||    
T  31252413 caattagattaattttcagaaattatatattataatcattaaaagataatctcacccttaccttag 31252478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 278
Target Start/End: Complemental strand, 19471391 - 19471335
Alignment:
Q  222 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||| ||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  19471391 tcaatttccagaaattatatattatgatcatcgagaggtagcctcacccttacctta 19471335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 276
Target Start/End: Complemental strand, 2286823 - 2286769
Alignment:
Q  222 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 276  Q
    ||||||||||||| ||||| ||||  || |||||||| |||||||||||||||||    
T  2286823 tcaattttcagaagttatatattacaatcattgagagttagtctcacccttacct 2286769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 278
Target Start/End: Original strand, 18659450 - 18659484
Alignment:
Q  244 tatgattattgagagatagtctcacccttacctta 278  Q
    ||||||||||||||| |||||||||||||||||||    
T  18659450 tatgattattgagagttagtctcacccttacctta 18659484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 278
Target Start/End: Original strand, 24441673 - 24441707
Alignment:
Q  244 tatgattattgagagatagtctcacccttacctta 278  Q
    ||||||||||||||| |||||||||||||||||||    
T  24441673 tatgattattgagagttagtctcacccttacctta 24441707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 11288721 - 11288668
Alignment:
Q  226 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||| |||| ||| ||||| ||||| || ||||||||||||||    
T  11288721 ttttcagaaattatatattaagatcattgaaagataatcccacccttaccttag 11288668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 15458492 - 15458545
Alignment:
Q  226 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||| ||||| || ||||| ||||| || ||||||||||||||    
T  15458492 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttag 15458545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Original strand, 15465087 - 15465140
Alignment:
Q  226 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||| ||||| || ||||| ||||| || ||||||||||||||    
T  15465087 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttag 15465140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 251 - 279
Target Start/End: Complemental strand, 28288537 - 28288509
Alignment:
Q  251 attgagagatagtctcacccttaccttag 279  Q
    |||||||||||||||||||||||||||||    
T  28288537 attgagagatagtctcacccttaccttag 28288509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 29415591 - 29415551
Alignment:
Q  244 tatgattattgagagatagtctcacccttaccttagttttg 284  Q
    ||||||||||||||| ||| ||||| |||||||||||||||    
T  29415591 tatgattattgagagttagcctcactcttaccttagttttg 29415551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 8e-58; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 109 - 289
Target Start/End: Original strand, 26583715 - 26583892
Alignment:
Q  109 ttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaag 207  Q
    ||||||||| ||||||| |||||| || | ||||||||| ||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||     
T  26583715 ttcattctgaacatcactttacaa-catatttaacatgatcattaccctttcccctcagaatcatcatcaagccctaaccctcaatttattttccaaaa- 26583812  T
Q  208 ctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 289  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26583813 ctat-gcaattaggtcaattt-cagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 26583892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 97 - 278
Target Start/End: Original strand, 6483593 - 6483772
Alignment:
Q  97 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaattt 195  Q
    |||| |||||||||||||||  |||| || |||||| |||||||||||||| || ||||  ||||| ||| |||||||||||| ||||||||||||||||    
T  6483593 atagattaagttttcattctaaacattacgttacaa-cagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaattt 6483691  T
Q  196 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6483692 attttccaaaa-ctat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 6483772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 97 - 278
Target Start/End: Original strand, 6487060 - 6487239
Alignment:
Q  97 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaattt 195  Q
    |||| |||||||||||||||  |||| || |||||| |||||||||||||| || ||||  ||||| ||| |||||||||||| ||||||||||||||||    
T  6487060 atagattaagttttcattctaaacattacgttacaa-cagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaattt 6487158  T
Q  196 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6487159 attttccaaaa-ctat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 6487239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 90 - 278
Target Start/End: Complemental strand, 19661640 - 19661454
Alignment:
Q  90 caacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccc 188  Q
    |||||| |||| |||||||||||||||  |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||||||||||| |||||||||    
T  19661640 caacaatatagattaagttttcattctaaacattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaaccc 19661542  T
Q  189 tcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||    
T  19661541 tcaatttatcttccaaaa-ctat-gcaattaggtcaattttcagaaattatagattatgattatcgagagaaagtctcacccttacctta 19661454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 97 - 276
Target Start/End: Original strand, 23878883 - 23879060
Alignment:
Q  97 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccat-ttcccgtcagaatcatcatcaaccctaaccctcaattt 195  Q
    |||| ||||| |||||||||| |||||||||||||| || ||||||||||| |||||||   ||||| |||||||||||| |||||||||||||||||||    
T  23878883 atagattaagatttcattctgaacatcacattacaa-cataattaacatgatcattaccccattcccctcagaatcatcaacaaccctaaccctcaattt 23878981  T
Q  196 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 276  Q
    |   |||  ||| |   |||||||||||||||||  ||||||||| || || |||| ||||||||||||||||||||||||    
T  23878982 a--atcctcaaggttaagcaattaggtcaatttttcgaaattatatataattattaatgagagatagtctcacccttacct 23879060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 164 - 279
Target Start/End: Complemental strand, 5706137 - 5706023
Alignment:
Q  164 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatag 262  Q
    |||||||||||||||| ||||||   |||  ||||||| ||||| ||||| ||||||||||||||| ||| |||||||||||||||||| ||||||||||    
T  5706137 tcagaatcatcatcaaaccctaattttcatattatttttcaaaaactatt-caattaggtcaattt-caggaattatagattatgattaatgagagatag 5706040  T
Q  263 tctcacccttaccttag 279  Q
    |||||||||||||||||    
T  5706039 tctcacccttaccttag 5706023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 87 - 276
Target Start/End: Complemental strand, 23089245 - 23089057
Alignment:
Q  87 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatc-aaccctaa 185  Q
    ||||||||  |||| ||||| |||||||| | || ||||||||||| || ||||||||||| |||||||  ||||| | |||||||||||| ||||||||    
T  23089245 cagcaacagtatagattaagatttcattccgaacgtcacattacaa-cataattaacatgatcattacccattccccttagaatcatcatcaaaccctaa 23089147  T
Q  186 ccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattat-gattattgagagatagtctcacccttacct 276  Q
    |||||||||  || |||  ||| |   |||||||||||||||||| ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  23089146 ccctcaatt--ttatcctcaaggttaagcaattaggtcaattttccgaaattaaatattatctattaatgagagatagtctcacccttacct 23089057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 97 - 278
Target Start/End: Complemental strand, 23101643 - 23101463
Alignment:
Q  97 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatc-aaccctaaccctcaattt 195  Q
    |||| ||||| |||||||| | || ||||||||||| || ||||||||||| |||||||  ||||| |||||||||||||| |||||||||||||||||     
T  23101643 atagattaagatttcattccgaacgtcacattacaa-cataattaacatgatcattacccattcccctcagaatcatcatcaaaccctaaccctcaatt- 23101546  T
Q  196 attttccaaaagctattgcaattaggtcaattttcagaaattatagattat-gattattgagagatagtctcacccttacctta 278  Q
     || |||  ||| |    ||||||||||||||||| ||||||| | |||||  |||| ||||||||||||||||||||||||||    
T  23101545 -ttatcctcaaggttaaacaattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacctta 23101463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 23265133 - 23265197
Alignment:
Q  214 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  23265133 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23265197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 23280201 - 23280265
Alignment:
Q  214 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  23280201 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23280265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 21908353 - 21908414
Alignment:
Q  217 ttaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    |||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  21908353 ttagatcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 21908414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 24661576 - 24661632
Alignment:
Q  222 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||||||||||||||| |||||||| || ||||| ||| |||||||||||||||    
T  24661576 tcaattttcagaaattatatattatgatcatcgagagttagcctcacccttacctta 24661632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 279
Target Start/End: Original strand, 10577 - 10632
Alignment:
Q  224 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  10577 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 10632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 279
Target Start/End: Complemental strand, 25180984 - 25180929
Alignment:
Q  224 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  25180984 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 25180929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 288
Target Start/End: Original strand, 26885139 - 26885246
Alignment:
Q  179 accctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    |||||||  |||||||| || ||||| | ||||| || |||| | ||||||||||||||||| |||| ||||||||| ||||| || |||||||||||||    
T  26885139 accctaattctcaattttttctccaagaactattcca-ttagattaattttcagaaattatacatta-gattattgaaagataatcccacccttacctta 26885236  T
Q  279 gttttgcaga 288  Q
    |  |||||||    
T  26885237 gaattgcaga 26885246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 23168351 - 23168288
Alignment:
Q  226 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 289  Q
    ||||||||||||||| |||||||| | ||| ||||| || ||||||||||||||  ||||||||    
T  23168351 ttttcagaaattatacattatgatcaatgaaagataatcccacccttaccttagaattgcagaa 23168288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 289
Target Start/End: Complemental strand, 23579608 - 23579545
Alignment:
Q  226 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 289  Q
    ||||||||||||||| |||||||| | ||| ||||| || ||||||||||||||  ||||||||    
T  23579608 ttttcagaaattatacattatgatcaatgaaagataatcccacccttaccttagaattgcagaa 23579545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0247 (Bit Score: 110; Significance: 2e-55; HSPs: 1)
Name: scaffold0247
Description:

Target: scaffold0247; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 102 - 289
Target Start/End: Original strand, 11221 - 11407
Alignment:
Q  102 ttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatt-tattt 199  Q
    ||||| ||||||| || |||||||||||||| |||||||||||||| ||||||   |||||  ||||||||||||||| ||||||||||||||| |||||    
T  11221 ttaagatttcattttgaacatcacattacaa-cagaattaacatgatcattactcattccctccagaatcatcatcaaaccctaaccctcaattctattt 11319  T
Q  200 tccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 289  Q
    ||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11320 tccaaaa-ctaa-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 11407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0553 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0553
Description:

Target: scaffold0553; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 97 - 279
Target Start/End: Complemental strand, 10376 - 10195
Alignment:
Q  97 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaattt 195  Q
    |||| |||||||||||||||  |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||||||||||| ||||||||| ||||||    
T  10376 atagattaagttttcattctaaacattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaacccacaattt 10278  T
Q  196 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    || |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  10277 atcttccaaaaactat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttag 10195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0544 (Bit Score: 108; Significance: 3e-54; HSPs: 1)
Name: scaffold0544
Description:

Target: scaffold0544; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 97 - 279
Target Start/End: Complemental strand, 1706 - 1525
Alignment:
Q  97 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaattt 195  Q
    |||| |||||||||||||||  |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||||||||||| ||||||||| ||||||    
T  1706 atagattaagttttcattctaaacattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaacccacaattt 1608  T
Q  196 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    || |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  1607 atcttccaaaaactat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtcccacccttaccttag 1525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 108; Significance: 3e-54; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 97 - 279
Target Start/End: Original strand, 44477498 - 44477678
Alignment:
Q  97 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaattt 195  Q
    |||| |||||||||||||||  |||| || |||||| |||||||||||||| || ||||  ||||| ||| |||||||||||| ||||||||||||||||    
T  44477498 atagattaagttttcattctaaacattacgttacaa-cagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaattt 44477596  T
Q  196 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44477597 attttccaaaa-ctat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 44477678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 97 - 279
Target Start/End: Original strand, 44492656 - 44492836
Alignment:
Q  97 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaattt 195  Q
    |||| |||||||||||||||  |||| || |||||| |||||||||||||| || ||||  ||||| ||| |||||||||||| ||||||||||||||||    
T  44492656 atagattaagttttcattctaaacattacgttacaa-cagaattaacatgatcaatacccattcccctcaaaatcatcatcaaaccctaaccctcaattt 44492754  T
Q  196 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44492755 attttccaaaa-ctat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 44492836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 88 - 289
Target Start/End: Original strand, 23866481 - 23866680
Alignment:
Q  88 agcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-ccctaa 185  Q
    |||||||||| || ||||||||  |||||| |||| | |||||||| ||||||||||||| ||||||| ||||| | ||| |||||||||||| ||||||    
T  23866481 agcaacaaca-agattaagtttatattctgaacattatattacaaatagaattaacatgatcattacccatttctcttcataatcatcatcaaaccctaa 23866579  T
Q  186 ccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgc 285  Q
    ||||||||||||||||||||| |||| |||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  23866580 ccctcaatttattttccaaaa-ctat-gcaattaggtcaattt-caggaattataaattatgattattgagagatagtctcacccttaccttagttttgc 23866676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 97 - 276
Target Start/End: Complemental strand, 8727913 - 8727735
Alignment:
Q  97 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaattt 195  Q
    |||| |||||||||||||||| |||| ||||||||| |||||||||||||| || ||||  | ||| ||||||||||| |||| ||||||||||||||||    
T  8727913 atagattaagttttcattctgaacattacattacaa-cagaattaacatgatcaatacccatacccctcagaatcatcgtcaaaccctaaccctcaattt 8727815  T
Q  196 attttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacct 276  Q
    || |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||    
T  8727814 atcttccaaaaactat-gcaattaggtcaattttcagaaattatagattatgattattgagggataatctcacccttacct 8727735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 164 - 289
Target Start/End: Original strand, 17054533 - 17054656
Alignment:
Q  164 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatag 262  Q
    |||||||||||||||| |||||||  |||  ||||||||||||| ||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  17054533 tcagaatcatcatcaaaccctaactttcatcttattttccaaaa-ctatt-caattaggtcaattt-caggaattatagattatgattattgagagatag 17054629  T
Q  263 tctcacccttaccttagttttgcagaa 289  Q
    ||||||||||||||| |||||||||||    
T  17054630 tctcacccttaccttggttttgcagaa 17054656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 23482117 - 23482053
Alignment:
Q  214 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  23482117 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 23482053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 18614271 - 18614327
Alignment:
Q  222 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||    
T  18614271 tcaattttcagaaattatatatcatgattattgagagatagtctcacccttacctta 18614327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 97 - 290
Target Start/End: Complemental strand, 27941034 - 27940840
Alignment:
Q  97 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatc-aaccctaaccctcaat-- 193  Q
    |||| |||| ||||||||||| |||| ||||||||| |||||||||||||| || ||||  ||||| |||||||||||||| ||||||||  | ||||      
T  27941034 atagattaaattttcattctgaacattacattacaa-cagaattaacatgatcaatacccattcccctcagaatcatcatcaaaccctaattcccaattc 27940936  T
Q  194 ttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaat 290  Q
    ||||||| ||| | | |||  ||| |   |||||||||||||| ||| ||||| || |||||  | ||| |||||||||||||||||||||||||||    
T  27940935 ttatttttcaagaacaattctaatca-aacaattttcagaaatcatatattataatcattgaaggttagcctcacccttaccttagttttgcagaat 27940840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 14056619 - 14056553
Alignment:
Q  223 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 289  Q
    |||||||||||| ||| | | ||| |||||||||||||||||||||||||||||||| |||||||||    
T  14056619 caattttcagaatttacatactattattattgagagatagtctcacccttaccttagatttgcagaa 14056553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 39364919 - 39364975
Alignment:
Q  222 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    |||||||||||||||| || | ||| |||||||||||||||||||||||||||||||    
T  39364919 tcaattttcagaaattctatactattattattgagagatagtctcacccttacctta 39364975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 223 - 289
Target Start/End: Original strand, 25111976 - 25112042
Alignment:
Q  223 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 289  Q
    |||||||||||| ||| | | ||| |||||||||||||||||||||||||||||||| |||| ||||    
T  25111976 caattttcagaatttacatactattattattgagagatagtctcacccttaccttagatttgtagaa 25112042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 224 - 278
Target Start/End: Complemental strand, 29643440 - 29643386
Alignment:
Q  224 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||||||||||| | |||||||||||||| ||||| ||||||||||||||||    
T  29643440 aattttcagaaattacatattatgattattgaaagataatctcacccttacctta 29643386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 279
Target Start/End: Complemental strand, 24320725 - 24320670
Alignment:
Q  224 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  24320725 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 24320670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 21931696 - 21931752
Alignment:
Q  222 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||||||||| ||||| ||||| || |||||||| ||| |||||||||||||||    
T  21931696 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacctta 21931752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 292
Target Start/End: Complemental strand, 23646750 - 23646710
Alignment:
Q  252 ttgagagatagtctcacccttaccttagttttgcagaataa 292  Q
    ||||||||||||||||||||| ||||| ||||||| |||||    
T  23646750 ttgagagatagtctcacccttgccttaattttgcaaaataa 23646710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1773 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: scaffold1773
Description:

Target: scaffold1773; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 87 - 286
Target Start/End: Original strand, 1044 - 1240
Alignment:
Q  87 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 184  Q
    ||||||||||| || |||||||||||||||| |||| | |||||||  ||||||||||||| ||||||| ||||||| ||| |||| ||||||| |||||    
T  1044 cagcaacaaca-agattaagttttcattctgaacattatattacaag-agaattaacatgatcattacccatttcccttcataatcctcatcaaacccta 1141  T
Q  185 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttg 284  Q
    |||||||||||||||||||||| |||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1142 accctcaatttattttccaaaa-ctat-gcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcacccttaccttagttttg 1238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0924 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: scaffold0924
Description:

Target: scaffold0924; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 138 - 289
Target Start/End: Complemental strand, 892 - 740
Alignment:
Q  138 attaacatgaccattacc-atttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaa 235  Q
    |||| ||||| ||||||| ||||||| ||| |||| ||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  892 attatcatgatcattacccatttcccttcataatcctcatcaaaccctaaccctcaatttattttccaaaaactat-gcaattaggtcaattttcagaaa 794  T
Q  236 ttatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 289  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  793 ttatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 106; Significance: 5e-53; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 87 - 286
Target Start/End: Original strand, 50045 - 50241
Alignment:
Q  87 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 184  Q
    ||||||||||| || |||||||||||||||| |||| | |||||||  ||||||||||||| ||||||| ||||||| ||| |||| ||||||| |||||    
T  50045 cagcaacaaca-agattaagttttcattctgaacattatattacaag-agaattaacatgatcattacccatttcccttcataatcctcatcaaacccta 50142  T
Q  185 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttg 284  Q
    |||||||||||||||||||||| |||| |||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50143 accctcaatttattttccaaaa-ctat-gcaattaggtcaattt-caggaattatagattatgattattgagagatagtctcacccttaccttagttttg 50239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 137 - 289
Target Start/End: Original strand, 206 - 356
Alignment:
Q  137 aattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaa 235  Q
    ||||||||||| |||||||  ||||| |||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  206 aattaacatgatcattacccattcccctcagaatcatcatcaaaccctaaccctcaatttattttccaaaa-ctat-gcaattaggtcaattt-cagaaa 302  T
Q  236 ttatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 289  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  303 ttatagattatggttattgagagatagtctcacccttaccttagttttgcagaa 356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 87 - 289
Target Start/End: Complemental strand, 8046022 - 8045822
Alignment:
Q  87 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattacc-atttcccgtcagaatcatcatcaa-cccta 184  Q
    |||||||||||  | |||||||||||||||| |||| | |||||||  ||||||||||| | | ||||| ||||||| |||||||  || |||| |||||    
T  8046022 cagcaacaacaaggattaagttttcattctgaacattatattacaag-agaattaacattatctttacccatttcccttcagaattctcgtcaaacccta 8045924  T
Q  185 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttg 284  Q
    |||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8045923 accctcaatttattttccaaaa-ctat-gcaattaggtcaattt-cagaaattatagattatgattatcgagagatagtctcacccttaccttagttttg 8045827  T
Q  285 cagaa 289  Q
    |||||    
T  8045826 cagaa 8045822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 87 - 289
Target Start/End: Original strand, 11847972 - 11848179
Alignment:
Q  87 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcc-cgtcagaatcatcatcaa-cccta 184  Q
    ||||||||||| || |||||||||||||||| |||| | |||| ||| || |||||||||| |||||||  |||| | |||||||| ||||||| |||||    
T  11847972 cagcaacaacaaagattaagttttcattctgaacattatattataaa-aggattaacatgatcattacccattcctcttcagaatcgtcatcaaacccta 11848070  T
Q  185 accctcaatttattttc------caaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    |||||||||| |||||       ||||| |||| || | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  11848071 accctcaattgattttaatttttcaaaa-ctat-gccactaggtcaattttcaggaattatagattatgattattgagagatagtctcacccttacctta 11848168  T
Q  279 gttttgcagaa 289  Q
    |||||||||||    
T  11848169 gttttgcagaa 11848179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 164 - 279
Target Start/End: Original strand, 53483646 - 53483760
Alignment:
Q  164 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatag 262  Q
    |||||||||||||||| ||||||   |||  ||||||| ||||| ||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  53483646 tcagaatcatcatcaaaccctaattttcatattatttttcaaaaactatt-caattaggtcaattt-caggaattatagattatgattattgagagatag 53483743  T
Q  263 tctcacccttaccttag 279  Q
    |||||||||||||||||    
T  53483744 tctcacccttaccttag 53483760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 223 - 289
Target Start/End: Original strand, 15408139 - 15408205
Alignment:
Q  223 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 289  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| | |||||||    
T  15408139 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatctgcagaa 15408205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 8834895 - 8834951
Alignment:
Q  222 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||    
T  8834895 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 8834951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 13888641 - 13888697
Alignment:
Q  222 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||    
T  13888641 tcaattttcagaaattatacattatgatcattgagagttagcctcacccttacctta 13888697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 224 - 276
Target Start/End: Original strand, 14486661 - 14486713
Alignment:
Q  224 aattttcagaaattatagattatgattattgagagatagtctcacccttacct 276  Q
    ||||||||||||||||| |||||||| |||||  |||||||||||||||||||    
T  14486661 aattttcagaaattatatattatgatcattgaaggatagtctcacccttacct 14486713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 15245215 - 15245271
Alignment:
Q  222 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||||||||||||||| |||| ||| |||||||| ||| |||||||||||||||    
T  15245215 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttacctta 15245271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 273
Target Start/End: Complemental strand, 22724742 - 22724691
Alignment:
Q  222 tcaattttcagaaattatagattatgattattgagagatagtctcaccctta 273  Q
    |||||||||||||||| || | ||| ||||||||||||||||||||||||||    
T  22724742 tcaattttcagaaattctatactattattattgagagatagtctcaccctta 22724691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 243 - 284
Target Start/End: Complemental strand, 15747592 - 15747551
Alignment:
Q  243 ttatgattattgagagatagtctcacccttaccttagttttg 284  Q
    |||| ||||||||||| |||||||||||||||||||||||||    
T  15747592 ttataattattgagagttagtctcacccttaccttagttttg 15747551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 15308120 - 15308176
Alignment:
Q  222 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||||||||||||||| |||| ||| |||||||| ||| |||||||||| ||||    
T  15308120 tcaattttcagaaattatatattacgatcattgagagttagcctcacccttaactta 15308176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 279
Target Start/End: Complemental strand, 16146885 - 16146830
Alignment:
Q  224 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  16146885 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttag 16146830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 279
Target Start/End: Original strand, 27906266 - 27906321
Alignment:
Q  224 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||||| |||||||| ||||| ||||| || |||||||| |||||    
T  27906266 aattttcagaaattatacattatgatcattgaaagataatcccacccttatcttag 27906321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 278
Target Start/End: Original strand, 15069781 - 15069811
Alignment:
Q  248 attattgagagatagtctcacccttacctta 278  Q
    |||||||||||||||||||||||||||||||    
T  15069781 attattgagagatagtctcacccttacctta 15069811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 248 - 278
Target Start/End: Original strand, 15076381 - 15076411
Alignment:
Q  248 attattgagagatagtctcacccttacctta 278  Q
    |||||||||||||||||||||||||||||||    
T  15076381 attattgagagatagtctcacccttacctta 15076411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 279
Target Start/End: Original strand, 14912081 - 14912138
Alignment:
Q  222 tcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||| ||||| ||||  || |||||||| |||||| |||||||||||||    
T  14912081 tcaattttcagaagttatatattacaatcattgagagttagtctaacccttaccttag 14912138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 89; Significance: 6e-43; HSPs: 2)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 87 - 289
Target Start/End: Complemental strand, 2087 - 1887
Alignment:
Q  87 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaa 185  Q
    |||||||||||  | ||||||||||||| || |||| | |||||||  ||||||||||| | |||||||  ||||  ||| |||||||||||| ||||||    
T  2087 cagcaacaacaaggattaagttttcattatgaacattaaattacaag-agaattaacataatcattacccattcca-tcaaaatcatcatcaaaccctaa 1990  T
Q  186 ccctcaatttattttccaaaagctattgcaattaggtcaatttt-cagaaattatagattatgattattgagagatagtctcacccttaccttagttttg 284  Q
    ||||||| ||||||||||||| ||||  |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1989 ccctcaaattattttccaaaa-ctata-caattaggtcaatttttcagaaattatagattatgattattgagatatagtctcacccttaccttagttttg 1892  T
Q  285 cagaa 289  Q
    |||||    
T  1891 cagaa 1887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117; HSP #2
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 87 - 289
Target Start/End: Complemental strand, 8764 - 8564
Alignment:
Q  87 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatcaa-ccctaa 185  Q
    |||||||||||  | ||||||||||||| || |||| | |||||||  ||||||||||| | |||||||  ||||  ||| |||||||||||| ||||||    
T  8764 cagcaacaacaaggattaagttttcattttgaacattaaattacaag-agaattaacataatcattacccattcca-tcataatcatcatcaaaccctaa 8667  T
Q  186 ccctcaatttattttccaaaagctattgcaattaggtcaatttt-cagaaattatagattatgattattgagagatagtctcacccttaccttagttttg 284  Q
    ||||||| ||||||||||||| ||||  |||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  8666 ccctcaaattattttccaaaa-ctata-caattaggtcaatttttcagaaattatagattatgattattgagatatagtctcacccttaccttagttttg 8569  T
Q  285 cagaa 289  Q
    |||||    
T  8568 cagaa 8564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 109 - 289
Target Start/End: Original strand, 30743 - 30923
Alignment:
Q  109 ttcattctggacatcacattacaaacagaattaacatgaccattac-catttcccgtcagaatcatcatcaa-ccctaaccctcaattt-attttccaaa 205  Q
    ||||||||| ||||||| |||||| || | ||||||||| | |||| |  ||||| ||| |||||||||||| |||||| ||||||||| |  |||||||    
T  30743 ttcattctgcacatcactttacaa-catatttaacatgatcgttacaccattcccctcaaaatcatcatcaaaccctaatcctcaattttaccttccaaa 30841  T
Q  206 agctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 289  Q
    | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30842 a-ctat-gcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 30923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: scaffold0796
Description:

Target: scaffold0796; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 164 - 284
Target Start/End: Complemental strand, 1845 - 1727
Alignment:
Q  164 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatag 262  Q
    |||||||||||||||| |||||||  |||  ||||||||||||| ||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  1845 tcagaatcatcatcaaaccctaactttcatattattttccaaaa-ctatt-caattaggtcaattt-caggaattatagattatgattattgagagatag 1749  T
Q  263 tctcacccttaccttagttttg 284  Q
    ||||||||||||||||||||||    
T  1748 tctcacccttaccttagttttg 1727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0796; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 164 - 284
Target Start/End: Complemental strand, 5868 - 5750
Alignment:
Q  164 tcagaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatag 262  Q
    |||||||||||||||| |||||||  |||  ||||||||||||| ||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||    
T  5868 tcagaatcatcatcaaaccctaactttcatattattttccaaaa-ctatt-caattaggtcaattt-caggaattatagattatgattattgagagatag 5772  T
Q  263 tctcacccttaccttagttttg 284  Q
    ||||||||||||||||||||||    
T  5771 tctcacccttaccttagttttg 5750  T

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Target: scaffold0456 (Bit Score: 68; Significance: 2e-30; HSPs: 4)
Name: scaffold0456
Description:

Target: scaffold0456; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 212 - 283
Target Start/End: Original strand, 920 - 991
Alignment:
Q  212 tgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagtttt 283  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  920 tgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagtttt 991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 212 - 283
Target Start/End: Original strand, 8065 - 8136
Alignment:
Q  212 tgcaattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagtttt 283  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8065 tgcaattaggtcaattttcagaaactatagattatgattattgagagatagtctcacccttaccttagtttt 8136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 854 - 899
Alignment:
Q  87 cagcaacaacataggttaagttttcattctggacatcacattacaa 132  Q
    ||||||||||| || |||||||||||||||| ||||||||||||||    
T  854 cagcaacaacacagattaagttttcattctgaacatcacattacaa 899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0456; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 7999 - 8044
Alignment:
Q  87 cagcaacaacataggttaagttttcattctggacatcacattacaa 132  Q
    ||||||||||| || |||||||||||||||| ||||||||||||||    
T  7999 cagcaacaacacagattaagttttcattctgaacatcacattacaa 8044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0476 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: scaffold0476
Description:

Target: scaffold0476; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 87 - 276
Target Start/End: Complemental strand, 3484 - 3295
Alignment:
Q  87 cagcaacaacataggttaagttttcattctggacatcacattacaaacagaattaacatga-ccattaccatttcccgtcagaatcatcatc-aacccta 184  Q
    ||||||||  |||| ||||| |||||||||| |||||||||||| |||| |||||||||||  |||||||  ||||| |||||||||||||| |||||||    
T  3484 cagcaacagtatagattaagatttcattctgaacatcacattac-aacaaaattaacatgattcattacccattcccctcagaatcatcatcaaacccta 3386  T
Q  185 accctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattat-gattattgagagatagtctcacccttacct 276  Q
    ||||||||||  || |||  ||| |   |||||||||||||||||| ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  3385 accctcaatt--ttatccccaaggttaagcaattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacct 3295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0129 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 166 - 285
Target Start/End: Complemental strand, 45386 - 45268
Alignment:
Q  166 agaatcatcatcaa-ccctaaccctcaatttattttccaaaagctattgcaattaggtcaattttcagaaattatagattatgattattgagagatagtc 264  Q
    |||||||||||||| ||||||   |||  ||||||| ||||| ||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||    
T  45386 agaatcatcatcaaaccctaattttcatattatttttcaaaaactatt-caattaggtcaattt-caggaattatagattatgattattgagagatagtc 45289  T
Q  265 tcacccttaccttagttttgc 285  Q
    ||||||||||||||| |||||    
T  45288 tcacccttaccttagatttgc 45268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 97 - 276
Target Start/End: Complemental strand, 3802 - 3624
Alignment:
Q  97 ataggttaagttttcattctggacatcacattacaaacagaattaacatgaccattaccatttcccgtcagaatcatcatc-aaccctaaccctcaattt 195  Q
    |||| ||||| |||||||| | |||||||||||||| || ||||||||||| |||||||  | ||| |||||||||||||| |||||||||||||||||     
T  3802 atagattaagatttcattccgaacatcacattacaa-cataattaacatgatcattacccatccccctcagaatcatcatcaaaccctaaccctcaatt- 3705  T
Q  196 attttccaaaagctattgcaattaggtcaattttcagaaattatagattat-gattattgagagatagtctcacccttacct 276  Q
     || |||  ||| |   |||||||||||||||||| ||||||| | |||||  |||| ||||||||||||||||||||||||    
T  3704 -ttatcctcaaggttaagcaattaggtcaattttccgaaattacatattatctattaatgagagatagtctcacccttacct 3624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0107 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0107
Description:

Target: scaffold0107; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 223 - 289
Target Start/End: Complemental strand, 40587 - 40521
Alignment:
Q  223 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 289  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||    
T  40587 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagatttgcagaa 40521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 16811 - 16875
Alignment:
Q  214 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  16811 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 16875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 116887 - 116951
Alignment:
Q  214 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||    
T  116887 caattagatcaattttcagaaattatatactatgattattgagagatagtctcacccttacctta 116951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 277
Target Start/End: Original strand, 60441 - 60474
Alignment:
Q  244 tatgattattgagagatagtctcacccttacctt 277  Q
    ||||||||||||||| ||||||||||||||||||    
T  60441 tatgattattgagagttagtctcacccttacctt 60474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0310 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0310
Description:

Target: scaffold0310; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 223 - 289
Target Start/End: Original strand, 17643 - 17710
Alignment:
Q  223 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttag-ttttgcagaa 289  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  17643 caattttcagaaattatacattatggttattgagagatagtctcacccttaccttagattttgcagaa 17710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 223 - 289
Target Start/End: Original strand, 135473 - 135539
Alignment:
Q  223 caattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 289  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||| |||||    
T  135473 caattttcagaaattatatactatgattattgagagatagtctcacccttaccttagattttcagaa 135539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0461 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0461
Description:

Target: scaffold0461; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 72 - 8
Alignment:
Q  214 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||| ||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  72 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 8  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0235 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0235
Description:

Target: scaffold0235; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 225 - 289
Target Start/End: Complemental strand, 22646 - 22582
Alignment:
Q  225 attttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 289  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||| | |||||||||    
T  22646 attttcagaaattatatactatgattattgagagatagtctcacccttaccttggatttgcagaa 22582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0146 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0146
Description:

Target: scaffold0146; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 13623 - 13687
Alignment:
Q  214 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||| ||||||||||||||||||  |||| ||||||||||||||||||||||||||||||||    
T  13623 caattagatcaattttcagaaattatgtattaagattattgagagatagtctcacccttacctta 13687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 101992 - 101928
Alignment:
Q  214 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||| ||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||    
T  101992 caattagatcaattttcaggaattatatactatgattattgagagatagtctcacccttacctta 101928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0124
Description:

Target: scaffold0124; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 34331 - 34276
Alignment:
Q  223 caattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    |||||||||||||||||| | ||||||||| |||||||||||||||||||||||||    
T  34331 caattttcagaaattatatactatgattatcgagagatagtctcacccttacctta 34276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0124; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 222 - 279
Target Start/End: Complemental strand, 35495 - 35438
Alignment:
Q  222 tcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||| ||||| ||||  || |||||||| |||||| |||||||||||||    
T  35495 tcaattttcagaagttatacattacaatcattgagagttagtcttacccttaccttag 35438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0815 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0815
Description:

Target: scaffold0815; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 227 - 289
Target Start/End: Original strand, 1453 - 1515
Alignment:
Q  227 tttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 289  Q
    |||||||||||||| |||| ||| |||||||| ||||||||||||||||||| ||||||||||    
T  1453 tttcagaaattatacattaagatcattgagagttagtctcacccttaccttaattttgcagaa 1515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0138 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0138
Description:

Target: scaffold0138; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 12296 - 12352
Alignment:
Q  222 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||||||||||||||| |||||||| |||||||| ||| |||||||||||||||    
T  12296 tcaattttcagaaattatatattatgatcattgagagttagcctcacccttacctta 12352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2054 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold2054
Description:

Target: scaffold2054; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 289
Target Start/End: Original strand, 717 - 780
Alignment:
Q  226 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 289  Q
    ||||||||||||||| |||| ||| ||||| ||||| || ||||||||||||||||||||||||    
T  717 ttttcagaaattatatattaagatcattgaaagataatcccacccttaccttagttttgcagaa 780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0317 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0317
Description:

Target: scaffold0317; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 1378 - 1441
Alignment:
Q  215 aattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    |||||| |||||||||| |||||||| || ||||| ||||| ||||||||||||||||||||||    
T  1378 aattagatcaattttcaaaaattatatatcatgatcattgaaagatagtctcacccttacctta 1441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0139 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0139
Description:

Target: scaffold0139; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 15052 - 14997
Alignment:
Q  223 caattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    |||||||||||||||||| |||| ||| |||||||| |||||||||||||||||||    
T  15052 caattttcagaaattatatattaagatcattgagagttagtctcacccttacctta 14997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0790 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0790
Description:

Target: scaffold0790; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 250 - 292
Target Start/End: Original strand, 5480 - 5522
Alignment:
Q  250 tattgagagatagtctcacccttaccttagttttgcagaataa 292  Q
    |||||| ||||||||||||||||||||||||||||||||||||    
T  5480 tattgaaagatagtctcacccttaccttagttttgcagaataa 5522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 222 - 282
Target Start/End: Complemental strand, 39563 - 39503
Alignment:
Q  222 tcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttt 282  Q
    ||||||||| ||||||||| |||||||| |||||||| ||| |||||||||||||| ||||    
T  39563 tcaattttctgaaattatatattatgatcattgagagttagcctcacccttacctttgttt 39503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 224 - 288
Target Start/End: Complemental strand, 493082 - 493019
Alignment:
Q  224 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcaga 288  Q
    ||||||||||||||||| |||| ||||||||| ||||| |||||||||||||||||  |||||||    
T  493082 aattttcagaaattatacatta-gattattgaaagataatctcacccttaccttagaattgcaga 493019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 279
Target Start/End: Original strand, 9336 - 9391
Alignment:
Q  224 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||||| ||||||| |||||| ||||| || ||||||||||||||    
T  9336 aattttcagaaattatatattatgactattgaaagataatcccacccttaccttag 9391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 279
Target Start/End: Original strand, 10239 - 10294
Alignment:
Q  224 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||| | |||||||||||||  ||||| |||||||||||||||||    
T  10239 aattttcagaaattacatattatgattattggaagataatctcacccttaccttag 10294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 224 - 279
Target Start/End: Original strand, 135438 - 135493
Alignment:
Q  224 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||||| ||||||| |||||| ||||| |||||| ||||||||||    
T  135438 aattttcagaaattatatattatgactattgaaagataatctcacgcttaccttag 135493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1318 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 278
Target Start/End: Complemental strand, 1967 - 1913
Alignment:
Q  224 aattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||||||||||||| ||||||| |||||| ||||| || |||||||||||||    
T  1967 aattttcagaaattatatattatgactattgaaagataatcccacccttacctta 1913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0609 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0609
Description:

Target: scaffold0609; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 214 - 279
Target Start/End: Complemental strand, 5922 - 5857
Alignment:
Q  214 caattaggtcaattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||| | ||||||||||||||||| ||||| || ||||| ||||| || ||||||||||||||    
T  5922 caattagattaattttcagaaattatatattataatcattgaaagataatcccacccttaccttag 5857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0261 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0261
Description:

Target: scaffold0261; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 289
Target Start/End: Complemental strand, 23624 - 23559
Alignment:
Q  224 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttagttttgcagaa 289  Q
    ||||||||||||||||| |||||||| ||| | ||||| || ||||||||||||||  ||||||||    
T  23624 aattttcagaaattatacattatgatcattcaaagataatcccacccttaccttagaattgcagaa 23559  T

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Target: scaffold0335 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0335
Description:

Target: scaffold0335; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 278
Target Start/End: Complemental strand, 2684 - 2628
Alignment:
Q  222 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||||||||| ||||| ||||| || |||||||| ||| |||||||||||||||    
T  2684 tcaattttcagaagttatatattataatcattgagagttagcctcacccttacctta 2628  T

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Target: scaffold0053 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 224 - 279
Target Start/End: Complemental strand, 79545 - 79490
Alignment:
Q  224 aattttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||| | ||||||| |||||| ||||| || ||||||||||||||    
T  79545 aattttcagaaattacatattatgactattgaaagataatcccacccttaccttag 79490  T

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Target: scaffold0481 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 277
Target Start/End: Complemental strand, 721 - 676
Alignment:
Q  232 gaaattatagattatgattattgagagatagtctcacccttacctt 277  Q
    ||||||||| |||| ||| |||||||| ||||||||||||||||||    
T  721 gaaattatacattaagatcattgagagttagtctcacccttacctt 676  T

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Target: scaffold0249 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 13947 - 13894
Alignment:
Q  226 ttttcagaaattatagattatgattattgagagatagtctcacccttaccttag 279  Q
    ||||||||||||||| ||||| || ||||| ||||| || ||||||||||||||    
T  13947 ttttcagaaattatatattataatcattgaaagataatcccacccttaccttag 13894  T

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Target: scaffold0600 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0600
Description:

Target: scaffold0600; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 732 - 788
Alignment:
Q  222 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||||||||| ||||| ||||| || |||||||| ||| ||||||| |||||||    
T  732 tcaattttcagaagttatatattataatcattgagagttagcctcacccctacctta 788  T

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Target: scaffold0180 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 278
Target Start/End: Original strand, 11630 - 11681
Alignment:
Q  229 tcagaaattataga--ttatgattattgagagatagtctcacccttacctta 278  Q
    |||||||||||| |  |||| ||||||||||| |||||||||||||||||||    
T  11630 tcagaaattatataatttataattattgagagttagtctcacccttacctta 11681  T

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Target: scaffold0034 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 276
Target Start/End: Original strand, 73285 - 73337
Alignment:
Q  224 aattttcagaaattatagattatgattattgagagatagtctcacccttacct 276  Q
    |||||||| |||||||| |||||||| ||||| ||||| || |||||||||||    
T  73285 aattttcataaattatacattatgatcattgaaagataatcccacccttacct 73337  T

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Target: scaffold0031 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 121902 - 121958
Alignment:
Q  222 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||||||||  ||||| ||||| || |||||||| ||| |||||||||||||||    
T  121902 tcaattttcagattttatatattataatcattgagagttagcctcacccttacctta 121958  T

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Target: scaffold0031; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 132778 - 132834
Alignment:
Q  222 tcaattttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    ||||||||||||  ||||| ||||| || |||||||| ||| |||||||||||||||    
T  132778 tcaattttcagattttatatattataatcattgagagttagcctcacccttacctta 132834  T

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Target: scaffold0028 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 69749 - 69801
Alignment:
Q  226 ttttcagaaattatagattatgattattgagagatagtctcacccttacctta 278  Q
    |||||| |||||||| |||| ||| ||||| || |||||||||||||||||||    
T  69749 ttttcataaattatatattaagatcattgaaagttagtctcacccttacctta 69801  T

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Target: scaffold0003 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 292
Target Start/End: Complemental strand, 80321 - 80293
Alignment:
Q  264 ctcacccttaccttagttttgcagaataa 292  Q
    |||||||||||||||||||||||||||||    
T  80321 ctcacccttaccttagttttgcagaataa 80293  T

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Target: scaffold0003; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 264 - 292
Target Start/End: Complemental strand, 100043 - 100015
Alignment:
Q  264 ctcacccttaccttagttttgcagaataa 292  Q
    |||||||||||||||||||||||||||||    
T  100043 ctcacccttaccttagttttgcagaataa 100015  T

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