View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20899_high_6 (Length: 325)
Name: NF20899_high_6
Description: NF20899
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20899_high_6 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 12 - 297
Target Start/End: Complemental strand, 32931641 - 32931352
Alignment:
| Q |
12 |
acagacacaaaacaaaacacagaatgaaaatgcaatggctatgttgtttgtttgtttgtt----cctataggtacatgatgagagtggttgagaagaagg |
107 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
32931641 |
acagacacaaaacaaaacatagaatgaaaatgcaatggctatgttgtttgtttgtttgtttgttcctataggtacatgatgagagtggttgagaagaagg |
32931542 |
T |
|
| Q |
108 |
aatttccacgacacttccttagaaaacaaaatgaaataaaaattgataatatgatttgaatttgcacgtacttcttaaaatggtacgtaatgaatgaata |
207 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32931541 |
aatttccacgacaattccttagaaaacaaaatgaaataaaaattgataatatgatttgaatttgcacgtacttcttaaaatggtacgtaatgaatgaata |
32931442 |
T |
|
| Q |
208 |
ttataaagagttgaaaaagaaccgtgtttgtgaatggttaatgaatgatgacaagtacatgtcttctgacataaacaaattctagtactt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32931441 |
ttataaagagttgaaaaagaaccgtgtttgtgaatggttaatgaatgatgacaagtacatgtcttctgacataaacaaattctagtactt |
32931352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University